Analysis of interatomic Contacts of Structural Units in PDB entry:
8S5A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S5A entry

There are 4 chains in PDB entry 8S5A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 372ALA 1008
B
 A 1 A 19
C
 G 1 G 8
D
 T 1 T 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8S5A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
373 388Right-handed alpha
Helix 2
AA2
A
389 394Right-handed alpha
Helix 3
AA3
A
397 409Right-handed alpha
Helix 4
AA4
A
411 423Right-handed alpha
Helix 5
AA5
A
443 453Right-handed alpha
Helix 6
AA6
A
460 462Right-handed 310
Helix 7
AA7
A
464 472Right-handed alpha
Helix 8
AA8
A
473 484Right-handed alpha
Helix 9
AA9
A
492 507Right-handed alpha
Helix 10
AB1
A
507 532Right-handed alpha
Helix 11
AB2
A
538 557Right-handed alpha
Helix 12
AB3
A
572 579Right-handed alpha
Helix 13
AB4
A
598 621Right-handed alpha
Helix 14
AB5
A
623 642Right-handed alpha
Helix 15
AB6
A
645 652Right-handed alpha
Helix 16
AB7
A
654 659Right-handed alpha
Helix 17
AB8
A
661 680Right-handed alpha
Helix 18
AB9
A
682 695Right-handed alpha
Helix 19
AC1
A
700 702Right-handed 310
Helix 20
AC2
A
703 718Right-handed alpha
Helix 21
AC3
A
721 735Right-handed alpha
Helix 22
AC4
A
739 755Right-handed alpha
Helix 23
AC5
A
756 760Right-handed 310
Helix 24
AC6
A
813 825Right-handed alpha
Helix 25
AC7
A
835 846Right-handed alpha
Helix 26
AC8
A
846 851Right-handed alpha
Helix 27
AC9
A
873 879Right-handed alpha
Helix 28
AD1
A
879 892Right-handed alpha
Helix 29
AD2
A
894 910Right-handed alpha
Helix 30
AD3
A
924 936Right-handed alpha
Helix 31
AD4
A
936 955Right-handed alpha
Helix 32
AD5
A
984 997Right-handed alpha
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There are 2 sheets in PDB entry 8S5A. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 430first strand
Strand 2
A
534 537anti-parallel
Strand 3
A
456 458anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
778 783first strand
Strand 2
A
1000 1007parallel
Strand 3
A
971 974parallel
Strand 4
A
961 964anti-parallel
Strand 5
A
829 832anti-parallel
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