Analysis of interatomic Contacts of Structural Units in PDB entry:
8S5F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S5F entry

There are 4 chains in PDB entry 8S5F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 358	GLY 718
B	MET 358	GLY 718
C	MET 358	GLY 718
D	MET 358	ALA 604

There are 80 helices in PDB entry 8S5F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	392	398	Right-handed alpha
Helix 2	AA2	A	402	432	Right-handed alpha
Helix 3	AA3	A	435	444	Right-handed alpha
Helix 4	AA4	A	446	454	Right-handed alpha
Helix 5	AA5	A	456	471	Right-handed alpha
Helix 6	AA6	A	488	496	Right-handed alpha
Helix 7	AA7	A	497	499	Right-handed 310
Helix 8	AA8	A	511	516	Right-handed alpha
Helix 9	AA9	A	527	548	Right-handed alpha
Helix 10	AB1	A	548	559	Right-handed alpha
Helix 11	AB2	A	599	623	Right-handed alpha
Helix 12	AB3	A	643	668	Right-handed alpha
Helix 13	AB4	A	672	696	Right-handed alpha
Helix 14	AB5	A	700	716	Right-handed alpha
Helix 15	AB6	B	392	398	Right-handed alpha
Helix 16	AB7	B	402	432	Right-handed alpha
Helix 17	AB8	B	435	444	Right-handed alpha
Helix 18	AB9	B	446	454	Right-handed alpha
Helix 19	AC1	B	456	471	Right-handed alpha
Helix 20	AC2	B	488	499	Right-handed alpha
Helix 21	AC3	B	511	516	Right-handed alpha
Helix 22	AC4	B	527	548	Right-handed alpha
Helix 23	AC5	B	548	559	Right-handed alpha
Helix 24	AC6	B	599	623	Right-handed alpha
Helix 25	AC7	B	643	668	Right-handed alpha
Helix 26	AC8	B	672	696	Right-handed alpha
Helix 27	AC9	B	700	716	Right-handed alpha
Helix 28	AD1	C	392	398	Right-handed alpha
Helix 29	AD2	C	402	432	Right-handed alpha
Helix 30	AD3	C	435	444	Right-handed alpha
Helix 31	AD4	C	446	454	Right-handed alpha
Helix 32	AD5	C	456	471	Right-handed alpha
Helix 33	AD6	C	488	497	Right-handed alpha
Helix 34	AD7	C	511	516	Right-handed alpha
Helix 35	AD8	C	527	548	Right-handed alpha
Helix 36	AD9	C	548	559	Right-handed alpha
Helix 37	AE1	C	599	623	Right-handed alpha
Helix 38	AE2	C	643	668	Right-handed alpha
Helix 39	AE3	C	672	696	Right-handed alpha
Helix 40	AE4	C	700	716	Right-handed alpha
Helix 41	AE5	D	393	397	Right-handed 310
Helix 42	AE6	D	402	432	Right-handed alpha
Helix 43	AE7	D	435	444	Right-handed alpha
Helix 44	AE8	D	446	454	Right-handed alpha
Helix 45	AE9	D	456	471	Right-handed alpha
Helix 46	AF1	D	488	496	Right-handed alpha
Helix 47	AF2	D	511	516	Right-handed alpha
Helix 48	AF3	D	527	548	Right-handed alpha
Helix 49	AF4	D	548	559	Right-handed alpha
Helix 50	AF5	D	599	622	Right-handed alpha
Helix 51	AF6	D	643	666	Right-handed alpha
Helix 52	AF7	D	673	696	Right-handed alpha
Helix 53	AF8	D	700	716	Right-handed alpha
Helix 54	AF9	E	392	398	Right-handed alpha
Helix 55	AG1	E	402	432	Right-handed alpha
Helix 56	AG2	E	435	444	Right-handed alpha
Helix 57	AG3	E	446	454	Right-handed alpha
Helix 58	AG4	E	456	471	Right-handed alpha
Helix 59	AG5	E	488	499	Right-handed alpha
Helix 60	AG6	E	511	516	Right-handed alpha
Helix 61	AG7	E	527	548	Right-handed alpha
Helix 62	AG8	E	548	559	Right-handed alpha
Helix 63	AG9	E	599	621	Right-handed alpha
Helix 64	AH1	E	643	667	Right-handed alpha
Helix 65	AH2	E	669	696	Right-handed alpha
Helix 66	AH3	E	700	716	Right-handed alpha
Helix 67	AH4	E	717	718	Right-handed 310
Helix 68	AH5	F	394	398	Right-handed 310
Helix 69	AH6	F	402	432	Right-handed alpha
Helix 70	AH7	F	435	444	Right-handed alpha
Helix 71	AH8	F	446	454	Right-handed alpha
Helix 72	AH9	F	456	471	Right-handed alpha
Helix 73	AI1	F	488	496	Right-handed alpha
Helix 74	AI2	F	511	516	Right-handed alpha
Helix 75	AI3	F	527	548	Right-handed alpha
Helix 76	AI4	F	548	559	Right-handed alpha
Helix 77	AI5	F	599	623	Right-handed alpha
Helix 78	AI6	F	643	668	Right-handed alpha
Helix 79	AI7	F	672	696	Right-handed alpha
Helix 80	AI8	F	700	718	Right-handed alpha

There are 22 sheets in PDB entry 8S5F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	507	first strand
Strand 2	A	561	566	parallel
Strand 3	A	523	524	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	507	first strand
Strand 2	A	561	566	parallel
Strand 3	A	586	590	parallel
Strand 4	A	577	578	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	593	first strand
Strand 2	A	596	597	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	634	first strand
Strand 2	A	641	642	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	506	507	first strand
Strand 2	B	561	566	parallel
Strand 3	B	523	524	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	506	507	first strand
Strand 2	B	561	566	parallel
Strand 3	B	586	590	parallel
Strand 4	B	577	578	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	592	593	first strand
Strand 2	B	596	598	anti-parallel
Strand 3	E	596	598	anti-parallel
Strand 4	E	592	593	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	506	507	first strand
Strand 2	C	561	566	parallel
Strand 3	C	523	524	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	506	507	first strand
Strand 2	C	561	566	parallel
Strand 3	C	586	590	parallel
Strand 4	C	577	578	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	592	593	first strand
Strand 2	C	596	597	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	634	first strand
Strand 2	C	641	642	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	506	507	first strand
Strand 2	D	561	566	parallel
Strand 3	D	523	524	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	506	507	first strand
Strand 2	D	561	566	parallel
Strand 3	D	586	590	parallel
Strand 4	D	577	578	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	592	593	first strand
Strand 2	D	596	597	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	633	634	first strand
Strand 2	D	641	642	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	506	507	first strand
Strand 2	E	561	566	parallel
Strand 3	E	523	524	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	506	507	first strand
Strand 2	E	561	566	parallel
Strand 3	E	586	590	parallel
Strand 4	E	577	578	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	633	634	first strand
Strand 2	E	641	642	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	506	507	first strand
Strand 2	F	561	566	parallel
Strand 3	F	523	524	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	506	507	first strand
Strand 2	F	561	566	parallel
Strand 3	F	586	590	parallel
Strand 4	F	577	578	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	592	593	first strand
Strand 2	F	596	597	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	633	634	first strand
Strand 2	F	641	642	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S5F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S5F