Analysis of interatomic Contacts of Structural Units in PDB entry:
8S5G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S5G entry

There are 5 chains in PDB entry 8S5G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 646
B
 VAL 2LEU 246
C
 VAL 2LEU 246
D
 MET 1LYS 116
E
 MET 1LYS 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8S5G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 18Right-handed alpha
Helix 2
AA2
A
18 41Right-handed alpha
Helix 3
AA3
A
42 47Right-handed 310
Helix 4
AA4
A
52 83Right-handed alpha
Helix 5
AA5
A
83 94Right-handed alpha
Helix 6
AA6
A
96 139Right-handed alpha
Helix 7
AA7
A
149 178Right-handed alpha
Helix 8
AA8
A
198 221Right-handed alpha
Helix 9
AA9
A
229 254Right-handed alpha
Helix 10
AB1
A
254 268Right-handed alpha
Helix 11
AB2
A
273 278Right-handed alpha
Helix 12
AB3
A
279 281Right-handed 310
Helix 13
AB4
A
286 288Right-handed 310
Helix 14
AB5
A
289 316Right-handed alpha
Helix 15
AB6
A
316 325Right-handed alpha
Helix 16
AB7
A
333 346Right-handed alpha
Helix 17
AB8
A
410 416Right-handed alpha
Helix 18
AB9
A
461 468Right-handed alpha
Helix 19
AC1
A
492 503Right-handed alpha
Helix 20
AC2
A
513 557Right-handed alpha
Helix 21
AC3
A
557 568Right-handed alpha
Helix 22
AC4
A
570 603Right-handed alpha
Helix 23
AC5
A
604 608Right-handed 310
Helix 24
AC6
A
612 646Right-handed alpha
Helix 25
AC7
B
45 54Right-handed alpha
Helix 26
AC8
B
77 86Right-handed alpha
Helix 27
AC9
B
101 107Right-handed alpha
Helix 28
AD1
B
108 112Right-handed 310
Helix 29
AD2
B
116 132Right-handed alpha
Helix 30
AD3
B
133 137Right-handed 310
Helix 31
AD4
B
140 144Right-handed 310
Helix 32
AD5
B
145 159Right-handed alpha
Helix 33
AD6
B
175 194Right-handed alpha
Helix 34
AD7
B
203 208Right-handed alpha
Helix 35
AD8
B
231 246Right-handed alpha
Helix 36
AD9
C
45 55Right-handed alpha
Helix 37
AE1
C
75 87Right-handed alpha
Helix 38
AE2
C
101 112Right-handed alpha
Helix 39
AE3
C
118 131Right-handed alpha
Helix 40
AE4
C
133 137Right-handed 310
Helix 41
AE5
C
140 144Right-handed 310
Helix 42
AE6
C
145 159Right-handed alpha
Helix 43
AE7
C
175 193Right-handed alpha
Helix 44
AE8
C
232 246Right-handed alpha
Helix 45
AE9
D
2 9Right-handed alpha
Helix 46
AF1
D
9 30Right-handed alpha
Helix 47
AF2
D
35 67Right-handed alpha
Helix 48
AF3
D
68 71Right-handed 310
Helix 49
AF4
D
72 77Right-handed 310
Helix 50
AF5
D
84 116Right-handed alpha
Helix 51
AF6
E
2 9Right-handed alpha
Helix 52
AF7
E
9 27Right-handed alpha
Helix 53
AF8
E
34 67Right-handed alpha
Helix 54
AF9
E
67 72Right-handed alpha
Helix 55
AG1
E
84 115Right-handed alpha
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There are 6 sheets in PDB entry 8S5G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 356first strand
Strand 2
A
483 488anti-parallel
Strand 3
A
329 331anti-parallel
Strand 4
A
511 512anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 406first strand
Strand 2
A
457 460anti-parallel
Strand 3
A
384 389parallel
Strand 4
A
358 364anti-parallel
Strand 5
A
424 427anti-parallel
Strand 6
A
433 435anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 30first strand
Strand 2
B
4 11anti-parallel
Strand 3
B
61 66anti-parallel
Strand 4
B
69 70anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
164 168parallel
Strand 3
B
196 200parallel
Strand 4
B
35 39parallel
Strand 5
B
212 217parallel
Strand 6
B
220 226anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 30first strand
Strand 2
C
4 9anti-parallel
Strand 3
C
63 66anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 90first strand
Strand 2
C
164 168parallel
Strand 3
C
196 200parallel
Strand 4
C
36 39parallel
Strand 5
C
212 215parallel
Strand 6
C
224 226anti-parallel
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