Analysis of interatomic Contacts of Structural Units in PDB entry:
8S5I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S5I entry

There are 12 chains in PDB entry 8S5I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 42	VAL 118
A	ASP 120	ARG 548
B	LEU 42	VAL 118
B	ASP 120	ARG 548
C	LEU 42	VAL 118
C	ASP 120	ARG 548
D	LEU 42	VAL 118
D	ASP 120	ARG 548
E	LEU 42	VAL 118
E	ASP 120	ARG 548
F	LEU 42	VAL 118
F	ASP 120	ARG 548

There are158 helices in PDB entry 8S5I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	63	Right-handed 310
Helix 2	AA2	A	79	83	Right-handed 310
Helix 3	AA3	A	93	99	Right-handed alpha
Helix 4	AA4	A	111	113	Right-handed 310
Helix 5	AA5	A	119	133	Right-handed alpha
Helix 6	AA6	A	148	162	Right-handed alpha
Helix 7	AA7	A	174	185	Right-handed alpha
Helix 8	AA8	A	202	214	Right-handed alpha
Helix 9	AA9	A	226	235	Right-handed alpha
Helix 10	AB1	A	235	244	Right-handed alpha
Helix 11	AB2	A	258	272	Right-handed alpha
Helix 12	AB3	A	290	295	Right-handed 310
Helix 13	AB4	A	316	320	Right-handed 310
Helix 14	AB5	A	327	343	Right-handed alpha
Helix 15	AB6	A	347	361	Right-handed alpha
Helix 16	AB7	A	362	364	Right-handed 310
Helix 17	AB8	A	377	382	Right-handed 310
Helix 18	AB9	A	387	395	Right-handed alpha
Helix 19	AC1	A	398	405	Right-handed alpha
Helix 20	AC2	A	407	412	Right-handed 310
Helix 21	AC3	A	413	417	Right-handed 310
Helix 22	AC4	A	430	440	Right-handed alpha
Helix 23	AC5	A	461	471	Right-handed alpha
Helix 24	AC6	A	478	482	Right-handed 310
Helix 25	AC7	A	495	504	Right-handed alpha
Helix 26	AC8	A	535	547	Right-handed alpha
Helix 27	AC9	B	59	63	Right-handed 310
Helix 28	AD1	B	79	83	Right-handed 310
Helix 29	AD2	B	93	99	Right-handed alpha
Helix 30	AD3	B	111	113	Right-handed 310
Helix 31	AD4	B	119	133	Right-handed alpha
Helix 32	AD5	B	148	162	Right-handed alpha
Helix 33	AD6	B	174	185	Right-handed alpha
Helix 34	AD7	B	202	214	Right-handed alpha
Helix 35	AD8	B	226	235	Right-handed alpha
Helix 36	AD9	B	235	244	Right-handed alpha
Helix 37	AE1	B	258	272	Right-handed alpha
Helix 38	AE2	B	290	295	Right-handed 310
Helix 39	AE3	B	316	320	Right-handed 310
Helix 40	AE4	B	327	343	Right-handed alpha
Helix 41	AE5	B	347	361	Right-handed alpha
Helix 42	AE6	B	362	364	Right-handed 310
Helix 43	AE7	B	377	382	Right-handed 310
Helix 44	AE8	B	387	395	Right-handed alpha
Helix 45	AE9	B	398	405	Right-handed alpha
Helix 46	AF1	B	407	412	Right-handed 310
Helix 47	AF2	B	413	417	Right-handed 310
Helix 48	AF3	B	430	440	Right-handed alpha
Helix 49	AF4	B	461	471	Right-handed alpha
Helix 50	AF5	B	478	482	Right-handed 310
Helix 51	AF6	B	495	504	Right-handed alpha
Helix 52	AF7	B	535	547	Right-handed alpha
Helix 53	AF8	C	59	63	Right-handed 310
Helix 54	AF9	C	79	83	Right-handed 310
Helix 55	AG1	C	94	99	Right-handed alpha
Helix 56	AG2	C	111	113	Right-handed 310
Helix 57	AG3	C	119	133	Right-handed alpha
Helix 58	AG4	C	148	162	Right-handed alpha
Helix 59	AG5	C	174	185	Right-handed alpha
Helix 60	AG6	C	202	214	Right-handed alpha
Helix 61	AG7	C	226	235	Right-handed alpha
Helix 62	AG8	C	235	244	Right-handed alpha
Helix 63	AG9	C	258	272	Right-handed alpha
Helix 64	AH1	C	290	295	Right-handed 310
Helix 65	AH2	C	316	320	Right-handed 310
Helix 66	AH3	C	327	343	Right-handed alpha
Helix 67	AH4	C	347	361	Right-handed alpha
Helix 68	AH5	C	362	364	Right-handed 310
Helix 69	AH6	C	377	382	Right-handed 310
Helix 70	AH7	C	387	394	Right-handed alpha
Helix 71	AH8	C	398	404	Right-handed alpha
Helix 72	AH9	C	405	406	Right-handed 310
Helix 73	AI1	C	407	412	Right-handed 310
Helix 74	AI2	C	413	417	Right-handed 310
Helix 75	AI3	C	430	442	Right-handed alpha
Helix 76	AI4	C	461	471	Right-handed alpha
Helix 77	AI5	C	478	482	Right-handed 310
Helix 78	AI6	C	495	504	Right-handed alpha
Helix 79	AI7	C	535	547	Right-handed alpha
Helix 80	AI8	D	59	63	Right-handed 310
Helix 81	AI9	D	79	84	Right-handed 310
Helix 82	AJ1	D	94	99	Right-handed alpha
Helix 83	AJ2	D	111	113	Right-handed 310
Helix 84	AJ3	D	119	133	Right-handed alpha
Helix 85	AJ4	D	148	162	Right-handed alpha
Helix 86	AJ5	D	174	184	Right-handed alpha
Helix 87	AJ6	D	202	214	Right-handed alpha
Helix 88	AJ7	D	226	235	Right-handed alpha
Helix 89	AJ8	D	235	245	Right-handed alpha
Helix 90	AJ9	D	258	272	Right-handed alpha
Helix 91	AK1	D	290	295	Right-handed 310
Helix 92	AK2	D	316	320	Right-handed 310
Helix 93	AK3	D	327	342	Right-handed alpha
Helix 94	AK4	D	347	361	Right-handed alpha
Helix 95	AK5	D	362	364	Right-handed 310
Helix 96	AK6	D	377	382	Right-handed 310
Helix 97	AK7	D	387	394	Right-handed alpha
Helix 98	AK8	D	398	405	Right-handed alpha
Helix 99	AK9	D	407	412	Right-handed 310
Helix 100	AL1	D	413	417	Right-handed 310
Helix 101	AL2	D	430	442	Right-handed alpha
Helix 102	AL3	D	461	470	Right-handed alpha
Helix 103	AL4	D	478	482	Right-handed 310
Helix 104	AL5	D	495	504	Right-handed alpha
Helix 105	AL6	D	535	547	Right-handed alpha
Helix 106	AL7	E	59	63	Right-handed 310
Helix 107	AL8	E	79	83	Right-handed 310
Helix 108	AL9	E	94	99	Right-handed alpha
Helix 109	AM1	E	111	113	Right-handed 310
Helix 110	AM2	E	119	133	Right-handed alpha
Helix 111	AM3	E	148	161	Right-handed alpha
Helix 112	AM4	E	174	184	Right-handed alpha
Helix 113	AM5	E	202	212	Right-handed alpha
Helix 114	AM6	E	226	235	Right-handed alpha
Helix 115	AM7	E	235	245	Right-handed alpha
Helix 116	AM8	E	258	272	Right-handed alpha
Helix 117	AM9	E	290	295	Right-handed 310
Helix 118	AN1	E	316	320	Right-handed 310
Helix 119	AN2	E	327	341	Right-handed alpha
Helix 120	AN3	E	347	361	Right-handed alpha
Helix 121	AN4	E	362	364	Right-handed 310
Helix 122	AN5	E	377	382	Right-handed 310
Helix 123	AN6	E	387	394	Right-handed alpha
Helix 124	AN7	E	398	404	Right-handed alpha
Helix 125	AN8	E	407	412	Right-handed 310
Helix 126	AN9	E	413	417	Right-handed 310
Helix 127	AO1	E	430	442	Right-handed alpha
Helix 128	AO2	E	461	470	Right-handed alpha
Helix 129	AO3	E	478	482	Right-handed 310
Helix 130	AO4	E	495	504	Right-handed alpha
Helix 131	AO5	E	535	547	Right-handed alpha
Helix 132	AO6	F	59	63	Right-handed 310
Helix 133	AO7	F	79	83	Right-handed 310
Helix 134	AO8	F	94	99	Right-handed alpha
Helix 135	AO9	F	111	113	Right-handed 310
Helix 136	AP1	F	119	133	Right-handed alpha
Helix 137	AP2	F	148	162	Right-handed alpha
Helix 138	AP3	F	174	185	Right-handed alpha
Helix 139	AP4	F	202	214	Right-handed alpha
Helix 140	AP5	F	226	235	Right-handed alpha
Helix 141	AP6	F	235	244	Right-handed alpha
Helix 142	AP7	F	258	272	Right-handed alpha
Helix 143	AP8	F	290	295	Right-handed 310
Helix 144	AP9	F	316	320	Right-handed 310
Helix 145	AQ1	F	327	341	Right-handed alpha
Helix 146	AQ2	F	347	361	Right-handed alpha
Helix 147	AQ3	F	362	364	Right-handed 310
Helix 148	AQ4	F	377	382	Right-handed 310
Helix 149	AQ5	F	387	394	Right-handed alpha
Helix 150	AQ6	F	398	404	Right-handed alpha
Helix 151	AQ7	F	405	406	Right-handed 310
Helix 152	AQ8	F	407	412	Right-handed 310
Helix 153	AQ9	F	413	417	Right-handed 310
Helix 154	AR1	F	430	442	Right-handed alpha
Helix 155	AR2	F	461	470	Right-handed alpha
Helix 156	AR3	F	478	482	Right-handed 310
Helix 157	AR4	F	495	504	Right-handed alpha
Helix 158	AR5	F	535	547	Right-handed alpha

There are 28 sheets in PDB entry 8S5I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	92	first strand
Strand 2	A	104	109	anti-parallel
Strand 3	A	369	374	parallel
Strand 4	A	250	254	parallel
Strand 5	A	276	282	parallel
Strand 6	A	322	326	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	191	first strand
Strand 2	A	164	170	parallel
Strand 3	A	141	145	parallel
Strand 4	A	217	219	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	425	first strand
Strand 2	F	509	518	parallel
Strand 3	F	488	490	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	425	first strand
Strand 2	F	509	518	parallel
Strand 3	F	524	534	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	449	first strand
Strand 2	A	455	460	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	A	509	518	parallel
Strand 3	A	525	534	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	A	509	518	parallel
Strand 3	F	423	425	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	92	first strand
Strand 2	B	104	109	anti-parallel
Strand 3	B	369	374	parallel
Strand 4	B	250	254	parallel
Strand 5	B	276	282	parallel
Strand 6	B	322	326	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	191	first strand
Strand 2	B	164	170	parallel
Strand 3	B	141	145	parallel
Strand 4	B	217	219	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	425	first strand
Strand 2	C	509	518	parallel
Strand 3	C	488	490	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	425	first strand
Strand 2	C	509	518	parallel
Strand 3	C	524	534	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	449	first strand
Strand 2	B	455	460	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	490	first strand
Strand 2	B	509	518	parallel
Strand 3	B	525	534	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	490	first strand
Strand 2	B	509	518	parallel
Strand 3	C	423	425	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	D	89	91	parallel
Strand 3	D	104	109	anti-parallel
Strand 4	D	369	374	parallel
Strand 5	D	250	254	parallel
Strand 6	D	276	282	parallel
Strand 7	D	322	326	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	326	first strand
Strand 2	C	276	282	parallel
Strand 3	C	250	254	parallel
Strand 4	C	369	374	parallel
Strand 5	C	104	109	parallel
Strand 6	C	89	91	anti-parallel
Strand 7	D	76	77	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	191	first strand
Strand 2	C	164	170	parallel
Strand 3	C	141	145	parallel
Strand 4	C	217	218	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	449	first strand
Strand 2	C	455	460	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	191	first strand
Strand 2	D	164	170	parallel
Strand 3	D	141	145	parallel
Strand 4	D	217	219	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	449	first strand
Strand 2	D	455	460	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	488	491	first strand
Strand 2	D	509	518	parallel
Strand 3	D	524	534	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	77	first strand
Strand 2	F	89	91	parallel
Strand 3	F	104	109	anti-parallel
Strand 4	F	369	374	parallel
Strand 5	F	250	254	parallel
Strand 6	F	276	282	parallel
Strand 7	F	322	326	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	322	326	first strand
Strand 2	E	276	282	parallel
Strand 3	E	250	254	parallel
Strand 4	E	369	374	parallel
Strand 5	E	104	109	parallel
Strand 6	E	89	91	anti-parallel
Strand 7	F	76	77	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	191	first strand
Strand 2	E	164	170	parallel
Strand 3	E	141	145	parallel
Strand 4	E	217	219	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	445	449	first strand
Strand 2	E	455	460	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	488	491	first strand
Strand 2	E	509	518	parallel
Strand 3	E	524	534	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	187	191	first strand
Strand 2	F	164	170	parallel
Strand 3	F	141	145	parallel
Strand 4	F	217	218	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	445	449	first strand
Strand 2	F	455	460	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S5I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S5I