Analysis of interatomic Contacts of Structural Units in PDB entry:
8S5L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S5L entry

There are 6 chains in PDB entry 8S5L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 42	VAL 118
A	ASP 120	GLU 404
B	LEU 42	ARG 548
C	LEU 42	ARG 548
D	LEU 42	VAL 118
D	ASP 120	GLU 404

There are 81 helices in PDB entry 8S5L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	63	Right-handed 310
Helix 2	AA2	A	79	84	Right-handed 310
Helix 3	AA3	A	94	99	Right-handed alpha
Helix 4	AA4	A	118	133	Right-handed alpha
Helix 5	AA5	A	148	162	Right-handed alpha
Helix 6	AA6	A	174	184	Right-handed alpha
Helix 7	AA7	A	202	214	Right-handed alpha
Helix 8	AA8	A	226	235	Right-handed alpha
Helix 9	AA9	A	235	243	Right-handed alpha
Helix 10	AB1	A	258	272	Right-handed alpha
Helix 11	AB2	A	290	295	Right-handed 310
Helix 12	AB3	A	328	343	Right-handed alpha
Helix 13	AB4	A	347	361	Right-handed alpha
Helix 14	AB5	A	362	364	Right-handed 310
Helix 15	AB6	A	378	382	Right-handed 310
Helix 16	AB7	A	387	394	Right-handed alpha
Helix 17	AB8	A	398	402	Right-handed 310
Helix 18	AB9	B	59	63	Right-handed 310
Helix 19	AC1	B	79	83	Right-handed 310
Helix 20	AC2	B	93	99	Right-handed alpha
Helix 21	AC3	B	121	133	Right-handed alpha
Helix 22	AC4	B	148	162	Right-handed alpha
Helix 23	AC5	B	174	185	Right-handed alpha
Helix 24	AC6	B	202	214	Right-handed alpha
Helix 25	AC7	B	226	235	Right-handed alpha
Helix 26	AC8	B	235	244	Right-handed alpha
Helix 27	AC9	B	261	272	Right-handed alpha
Helix 28	AD1	B	290	295	Right-handed 310
Helix 29	AD2	B	327	343	Right-handed alpha
Helix 30	AD3	B	347	361	Right-handed alpha
Helix 31	AD4	B	377	382	Right-handed 310
Helix 32	AD5	B	387	394	Right-handed alpha
Helix 33	AD6	B	398	405	Right-handed alpha
Helix 34	AD7	B	407	412	Right-handed 310
Helix 35	AD8	B	413	417	Right-handed 310
Helix 36	AD9	B	430	441	Right-handed alpha
Helix 37	AE1	B	460	470	Right-handed alpha
Helix 38	AE2	B	478	482	Right-handed 310
Helix 39	AE3	B	495	504	Right-handed alpha
Helix 40	AE4	B	535	548	Right-handed alpha
Helix 41	AE5	C	59	63	Right-handed 310
Helix 42	AE6	C	79	83	Right-handed 310
Helix 43	AE7	C	93	99	Right-handed alpha
Helix 44	AE8	C	119	133	Right-handed alpha
Helix 45	AE9	C	148	162	Right-handed alpha
Helix 46	AF1	C	174	185	Right-handed alpha
Helix 47	AF2	C	202	214	Right-handed alpha
Helix 48	AF3	C	226	235	Right-handed alpha
Helix 49	AF4	C	235	244	Right-handed alpha
Helix 50	AF5	C	258	272	Right-handed alpha
Helix 51	AF6	C	290	295	Right-handed 310
Helix 52	AF7	C	316	320	Right-handed 310
Helix 53	AF8	C	327	343	Right-handed alpha
Helix 54	AF9	C	347	361	Right-handed alpha
Helix 55	AG1	C	377	382	Right-handed 310
Helix 56	AG2	C	387	395	Right-handed alpha
Helix 57	AG3	C	398	405	Right-handed alpha
Helix 58	AG4	C	407	412	Right-handed 310
Helix 59	AG5	C	413	417	Right-handed 310
Helix 60	AG6	C	430	442	Right-handed alpha
Helix 61	AG7	C	460	470	Right-handed alpha
Helix 62	AG8	C	478	482	Right-handed 310
Helix 63	AG9	C	495	504	Right-handed alpha
Helix 64	AH1	C	535	548	Right-handed alpha
Helix 65	AH2	D	59	63	Right-handed 310
Helix 66	AH3	D	79	84	Right-handed 310
Helix 67	AH4	D	93	99	Right-handed alpha
Helix 68	AH5	D	118	133	Right-handed alpha
Helix 69	AH6	D	148	162	Right-handed alpha
Helix 70	AH7	D	174	184	Right-handed alpha
Helix 71	AH8	D	202	214	Right-handed alpha
Helix 72	AH9	D	226	235	Right-handed alpha
Helix 73	AI1	D	235	245	Right-handed alpha
Helix 74	AI2	D	258	272	Right-handed alpha
Helix 75	AI3	D	290	295	Right-handed 310
Helix 76	AI4	D	328	343	Right-handed alpha
Helix 77	AI5	D	347	361	Right-handed alpha
Helix 78	AI6	D	362	364	Right-handed 310
Helix 79	AI7	D	378	382	Right-handed 310
Helix 80	AI8	D	387	394	Right-handed alpha
Helix 81	AI9	D	399	404	Right-handed alpha

There are 14 sheets in PDB entry 8S5L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	104	109	anti-parallel
Strand 3	A	369	374	parallel
Strand 4	A	250	254	parallel
Strand 5	A	278	282	parallel
Strand 6	A	322	326	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	191	first strand
Strand 2	A	164	170	parallel
Strand 3	A	141	145	parallel
Strand 4	A	217	219	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	104	109	anti-parallel
Strand 3	B	369	374	parallel
Strand 4	B	250	254	parallel
Strand 5	B	276	282	parallel
Strand 6	B	322	326	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	190	first strand
Strand 2	B	164	169	parallel
Strand 3	B	141	145	parallel
Strand 4	B	217	219	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	425	first strand
Strand 2	C	509	518	parallel
Strand 3	C	488	491	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	425	first strand
Strand 2	C	509	518	parallel
Strand 3	C	526	534	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	449	first strand
Strand 2	B	455	457	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	509	518	parallel
Strand 3	B	524	534	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	509	518	parallel
Strand 3	C	423	425	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	104	109	anti-parallel
Strand 3	C	369	374	parallel
Strand 4	C	250	254	parallel
Strand 5	C	276	282	parallel
Strand 6	C	325	326	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	190	first strand
Strand 2	C	164	169	parallel
Strand 3	C	141	145	parallel
Strand 4	C	217	219	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	449	first strand
Strand 2	C	455	457	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	104	109	anti-parallel
Strand 3	D	369	374	parallel
Strand 4	D	250	254	parallel
Strand 5	D	276	282	parallel
Strand 6	D	322	326	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	191	first strand
Strand 2	D	164	170	parallel
Strand 3	D	141	145	parallel
Strand 4	D	217	219	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S5L

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S5L