Analysis of interatomic Contacts of Structural Units in PDB entry:
8S5M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S5M entry

There are 10 chains in PDB entry 8S5M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 1	LYS 144
B	TRP 1	LYS 144
C	TRP 1	LYS 144
D	TRP 1	LYS 144
E	TRP 1	LYS 144
F	TRP 1	LYS 144
G	TRP 1	LYS 144
H	TRP 1	LYS 144
I	TRP 1	LYS 144
J	TRP 1	LYS 144

There are 71 helices in PDB entry 8S5M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	5	Right-handed 310
Helix 2	AA2	A	6	11	Right-handed 310
Helix 3	AA3	A	23	35	Right-handed alpha
Helix 4	AA4	A	54	63	Right-handed alpha
Helix 5	AA5	A	71	75	Right-handed 310
Helix 6	AA6	A	88	96	Right-handed alpha
Helix 7	AA7	A	129	137	Right-handed alpha
Helix 8	AA8	A	138	142	Right-handed 310
Helix 9	AA9	B	1	5	Right-handed 310
Helix 10	AB1	B	6	11	Right-handed 310
Helix 11	AB2	B	23	35	Right-handed alpha
Helix 12	AB3	B	54	63	Right-handed alpha
Helix 13	AB4	B	72	76	Right-handed 310
Helix 14	AB5	B	88	96	Right-handed alpha
Helix 15	AB6	B	128	140	Right-handed alpha
Helix 16	AB7	C	1	5	Right-handed 310
Helix 17	AB8	C	6	11	Right-handed 310
Helix 18	AB9	C	23	35	Right-handed alpha
Helix 19	AC1	C	53	63	Right-handed alpha
Helix 20	AC2	C	71	75	Right-handed 310
Helix 21	AC3	C	88	98	Right-handed alpha
Helix 22	AC4	C	128	143	Right-handed alpha
Helix 23	AC5	D	1	5	Right-handed 310
Helix 24	AC6	D	6	10	Right-handed 310
Helix 25	AC7	D	23	35	Right-handed alpha
Helix 26	AC8	D	54	63	Right-handed alpha
Helix 27	AC9	D	72	76	Right-handed 310
Helix 28	AD1	D	88	98	Right-handed alpha
Helix 29	AD2	D	128	140	Right-handed alpha
Helix 30	AD3	E	1	5	Right-handed 310
Helix 31	AD4	E	6	11	Right-handed 310
Helix 32	AD5	E	23	35	Right-handed alpha
Helix 33	AD6	E	53	63	Right-handed alpha
Helix 34	AD7	E	71	76	Right-handed 310
Helix 35	AD8	E	88	97	Right-handed alpha
Helix 36	AD9	E	128	144	Right-handed alpha
Helix 37	AE1	F	1	5	Right-handed 310
Helix 38	AE2	F	6	11	Right-handed 310
Helix 39	AE3	F	23	34	Right-handed alpha
Helix 40	AE4	F	54	63	Right-handed alpha
Helix 41	AE5	F	71	76	Right-handed 310
Helix 42	AE6	F	88	96	Right-handed alpha
Helix 43	AE7	F	128	140	Right-handed alpha
Helix 44	AE8	G	1	5	Right-handed 310
Helix 45	AE9	G	6	11	Right-handed alpha
Helix 46	AF1	G	23	34	Right-handed alpha
Helix 47	AF2	G	53	64	Right-handed alpha
Helix 48	AF3	G	71	76	Right-handed 310
Helix 49	AF4	G	88	97	Right-handed alpha
Helix 50	AF5	G	128	143	Right-handed alpha
Helix 51	AF6	H	1	5	Right-handed 310
Helix 52	AF7	H	6	11	Right-handed 310
Helix 53	AF8	H	23	34	Right-handed alpha
Helix 54	AF9	H	53	63	Right-handed alpha
Helix 55	AG1	H	71	76	Right-handed 310
Helix 56	AG2	H	88	99	Right-handed alpha
Helix 57	AG3	H	128	140	Right-handed alpha
Helix 58	AG4	I	1	5	Right-handed 310
Helix 59	AG5	I	6	11	Right-handed alpha
Helix 60	AG6	I	23	35	Right-handed alpha
Helix 61	AG7	I	54	63	Right-handed alpha
Helix 62	AG8	I	71	75	Right-handed 310
Helix 63	AG9	I	88	99	Right-handed alpha
Helix 64	AH1	I	128	140	Right-handed alpha
Helix 65	AH2	J	1	5	Right-handed 310
Helix 66	AH3	J	6	11	Right-handed alpha
Helix 67	AH4	J	23	35	Right-handed alpha
Helix 68	AH5	J	53	63	Right-handed alpha
Helix 69	AH6	J	71	76	Right-handed 310
Helix 70	AH7	J	88	97	Right-handed alpha
Helix 71	AH8	J	128	144	Right-handed alpha

There are 26 sheets in PDB entry 8S5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	42	first strand
Strand 2	A	48	53	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	101	111	parallel
Strand 3	A	117	128	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	101	111	parallel
Strand 3	C	16	18	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	E	103	111	parallel
Strand 3	E	82	84	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	E	103	111	parallel
Strand 3	E	117	123	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	42	first strand
Strand 2	B	48	53	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	102	111	parallel
Strand 3	B	117	127	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	102	111	parallel
Strand 3	E	16	18	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	42	first strand
Strand 2	C	48	52	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	102	111	parallel
Strand 3	C	117	127	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	42	first strand
Strand 2	D	48	53	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	84	first strand
Strand 2	D	102	111	parallel
Strand 3	D	120	127	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	84	first strand
Strand 2	D	102	111	parallel
Strand 3	H	16	18	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	42	first strand
Strand 2	E	48	50	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	18	first strand
Strand 2	I	102	111	parallel
Strand 3	I	82	84	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	18	first strand
Strand 2	I	102	111	parallel
Strand 3	I	117	127	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	42	first strand
Strand 2	F	48	53	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	F	102	106	parallel
Strand 3	F	122	127	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	109	111	first strand
Strand 2	I	16	18	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	42	first strand
Strand 2	G	48	52	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	82	84	first strand
Strand 2	G	102	107	parallel
Strand 3	G	121	127	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	42	first strand
Strand 2	H	48	50	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	84	first strand
Strand 2	H	102	111	parallel
Strand 3	H	117	127	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	38	42	first strand
Strand 2	I	48	53	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	42	first strand
Strand 2	J	48	52	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	82	84	first strand
Strand 2	J	102	106	parallel
Strand 3	J	122	127	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S5M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S5M