Analysis of interatomic Contacts of Structural Units in PDB entry:
8S5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S5R entry

There are 2 chains in PDB entry 8S5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 11ALA 247
A
 LEU 12ALA 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8S5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
12 45Right-handed alpha
Helix 2
AA2
B
45 71Right-handed alpha
Helix 3
AA3
B
81 104Right-handed alpha
Helix 4
AA4
B
113 126Right-handed alpha
Helix 5
AA5
B
127 129Right-handed 310
Helix 6
AA6
B
134 146Right-handed alpha
Helix 7
AA7
B
155 173Right-handed alpha
Helix 8
AA8
B
176 203Right-handed alpha
Helix 9
AA9
B
208 230Right-handed alpha
Helix 10
AB1
B
230 244Right-handed alpha
Helix 11
AB2
A
13 44Right-handed alpha
Helix 12
AB3
A
45 71Right-handed alpha
Helix 13
AB4
A
81 104Right-handed alpha
Helix 14
AB5
A
113 126Right-handed alpha
Helix 15
AB6
A
127 129Right-handed 310
Helix 16
AB7
A
134 146Right-handed alpha
Helix 17
AB8
A
155 173Right-handed alpha
Helix 18
AB9
A
176 203Right-handed alpha
Helix 19
AC1
A
208 230Right-handed alpha
Helix 20
AC2
A
230 245Right-handed alpha
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There are no sheets in PDB entry 8S5R
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il