Analysis of interatomic Contacts of Structural Units in PDB entry:
8S5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S5S entry

There is 1 chain in PDB entry 8S5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4HIS 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8S5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed alpha
Helix 2
AA2
A
31 37Right-handed alpha
Helix 3
AA3
A
86 91Right-handed 310
Helix 4
AA4
A
106 110Right-handed 310
Helix 5
AA5
A
134 141Right-handed alpha
Helix 6
AA6
A
158 162Right-handed 310
Helix 7
AA7
A
172 176Right-handed 310
Helix 8
AA8
A
189 193Right-handed 310
Helix 9
AA9
A
204 208Right-handed 310
Helix 10
AB1
A
357 362Right-handed 310
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There are 7 sheets in PDB entry 8S5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
27 29anti-parallel
Strand 3
A
49 50anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
70 75anti-parallel
Strand 3
A
212 218parallel
Strand 4
A
151 156anti-parallel
Strand 5
A
166 170anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 101first strand
Strand 2
A
124 133anti-parallel
Strand 3
A
178 183anti-parallel
Strand 4
A
186 187anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 101first strand
Strand 2
A
124 133anti-parallel
Strand 3
A
178 183anti-parallel
Strand 4
A
197 199anti-parallel
Strand 5
A
209 210anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
259 261anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 273first strand
Strand 2
A
284 292anti-parallel
Strand 3
A
327 334anti-parallel
Strand 4
A
316 317anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
373 379parallel
Strand 3
A
338 348anti-parallel
Strand 4
A
299 305anti-parallel
Strand 5
A
313 314anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il