Analysis of interatomic Contacts of Structural Units in PDB entry:
8S5U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S5U entry

There are 2 chains in PDB entry 8S5U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 1SER 128
A
 SER 11TYR 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8S5U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
87 91Right-handed 310
Helix 2
AA2
B
110 113Right-handed 310
Helix 3
AA3
A
12 28Right-handed alpha
Helix 4
AA4
A
31 33Right-handed 310
Helix 5
AA5
A
34 41Right-handed alpha
Helix 6
AA6
A
47 54Right-handed alpha
Helix 7
AA7
A
55 74Right-handed alpha
Helix 8
AA8
A
78 99Right-handed alpha
Helix 9
AA9
A
103 119Right-handed alpha
Helix 10
AB1
A
120 127Right-handed alpha
Helix 11
AB2
A
128 130Right-handed 310
Helix 12
AB3
A
132 134Right-handed 310
Helix 13
AB4
A
135 166Right-handed alpha
Helix 14
AB5
A
168 188Right-handed alpha
Helix 15
AB6
A
271 274Right-handed 310
Helix 16
AB7
A
275 296Right-handed alpha
Helix 17
AB8
A
298 307Right-handed alpha
Helix 18
AB9
A
311 335Right-handed alpha
Helix 19
AC1
A
340 366Right-handed alpha
Helix 20
AC2
A
368 397Right-handed alpha
Helix 21
AC3
A
402 426Right-handed alpha
Helix 22
AC4
A
434 455Right-handed alpha
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There are 3 sheets in PDB entry 8S5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
122 127parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
34 38anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
122 127parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
115 116anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il