Analysis of interatomic Contacts of Structural Units in PDB entry:
8S61


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S61 entry

There are 2 chains in PDB entry 8S61 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 2SER 123
A
 SER 11TYR 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8S61. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 28Right-handed alpha
Helix 2
AA2
A
35 40Right-handed alpha
Helix 3
AA3
A
47 52Right-handed alpha
Helix 4
AA4
A
56 66Right-handed alpha
Helix 5
AA5
A
67 77Right-handed alpha
Helix 6
AA6
A
78 97Right-handed alpha
Helix 7
AA7
A
103 119Right-handed alpha
Helix 8
AA8
A
120 125Right-handed alpha
Helix 9
AA9
A
125 131Right-handed alpha
Helix 10
AB1
A
132 135Right-handed 310
Helix 11
AB2
A
136 162Right-handed alpha
Helix 12
AB3
A
169 171Right-handed 310
Helix 13
AB4
A
172 187Right-handed alpha
Helix 14
AB5
A
271 274Right-handed 310
Helix 15
AB6
A
275 298Right-handed alpha
Helix 16
AB7
A
299 307Right-handed alpha
Helix 17
AB8
A
315 335Right-handed alpha
Helix 18
AB9
A
345 366Right-handed alpha
Helix 19
AC1
A
368 395Right-handed alpha
Helix 20
AC2
A
403 426Right-handed alpha
Helix 21
AC3
A
434 452Right-handed alpha
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There are 4 sheets in PDB entry 8S61. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
18 22anti-parallel
Strand 3
B
79 83anti-parallel
Strand 4
B
69 72anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
37 39anti-parallel
Strand 3
B
92 95anti-parallel
Strand 4
B
117 119anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
112 113anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
A
100 101anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il