Analysis of interatomic Contacts of Structural Units in PDB entry:
8S65


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S65 entry

There are 2 chains in PDB entry 8S65 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 25LYS 472
B
 ARG 25LYS 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8S65. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 49Right-handed alpha
Helix 2
AA2
A
64 76Right-handed alpha
Helix 3
AA3
A
84 86Right-handed 310
Helix 4
AA4
A
87 102Right-handed alpha
Helix 5
AA5
A
112 121Right-handed alpha
Helix 6
AA6
A
133 136Right-handed 310
Helix 7
AA7
A
137 147Right-handed alpha
Helix 8
AA8
A
155 170Right-handed alpha
Helix 9
AA9
A
229 239Right-handed alpha
Helix 10
AB1
A
243 247Right-handed 310
Helix 11
AB2
A
266 270Right-handed 310
Helix 12
AB3
A
273 278Right-handed alpha
Helix 13
AB4
A
286 295Right-handed alpha
Helix 14
AB5
A
296 311Right-handed alpha
Helix 15
AB6
A
313 315Right-handed 310
Helix 16
AB7
A
347 357Right-handed alpha
Helix 17
AB8
A
370 375Right-handed alpha
Helix 18
AB9
A
387 400Right-handed alpha
Helix 19
AC1
A
402 420Right-handed alpha
Helix 20
AC2
A
425 442Right-handed alpha
Helix 21
AC3
A
450 468Right-handed alpha
Helix 22
AC4
B
36 49Right-handed alpha
Helix 23
AC5
B
64 76Right-handed alpha
Helix 24
AC6
B
84 86Right-handed 310
Helix 25
AC7
B
87 102Right-handed alpha
Helix 26
AC8
B
114 121Right-handed alpha
Helix 27
AC9
B
134 136Right-handed 310
Helix 28
AD1
B
137 147Right-handed alpha
Helix 29
AD2
B
155 171Right-handed alpha
Helix 30
AD3
B
229 239Right-handed alpha
Helix 31
AD4
B
243 247Right-handed 310
Helix 32
AD5
B
265 272Right-handed 310
Helix 33
AD6
B
273 278Right-handed alpha
Helix 34
AD7
B
286 295Right-handed alpha
Helix 35
AD8
B
296 311Right-handed alpha
Helix 36
AD9
B
347 357Right-handed alpha
Helix 37
AE1
B
370 375Right-handed alpha
Helix 38
AE2
B
388 400Right-handed alpha
Helix 39
AE3
B
402 420Right-handed alpha
Helix 40
AE4
B
425 442Right-handed alpha
Helix 41
AE5
B
450 468Right-handed alpha
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There are 4 sheets in PDB entry 8S65. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 111first strand
Strand 2
A
79 82parallel
Strand 3
A
53 60parallel
Strand 4
A
27 32parallel
Strand 5
A
127 130parallel
Strand 6
A
150 153parallel
Strand 7
A
225 227parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 321first strand
Strand 2
A
251 256parallel
Strand 3
A
327 332anti-parallel
Strand 4
A
338 342anti-parallel
Strand 5
B
338 342anti-parallel
Strand 6
B
327 332anti-parallel
Strand 7
B
251 256anti-parallel
Strand 8
B
317 321parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
B
376 378anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
79 82parallel
Strand 3
B
53 60parallel
Strand 4
B
27 32parallel
Strand 5
B
127 130parallel
Strand 6
B
150 153parallel
Strand 7
B
225 227parallel
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