Analysis of interatomic Contacts of Structural Units in PDB entry:
8S6C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S6C entry

There is 1 chain in PDB entry 8S6C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LYS 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8S6C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 56Right-handed alpha
Helix 2
AA2
A
70 84Right-handed alpha
Helix 3
AA3
A
145 150Right-handed alpha
Helix 4
AA4
A
152 159Right-handed alpha
Helix 5
AA5
A
203 228Right-handed alpha
Helix 6
AA6
A
232 255Right-handed alpha
Helix 7
AA7
A
255 262Right-handed alpha
Helix 8
AA8
A
263 265Right-handed 310
Helix 9
AA9
A
282 287Right-handed alpha
Helix 10
AB1
A
292 297Right-handed alpha
Helix 11
AB2
A
319 322Right-handed 310
Helix 12
AB3
A
325 331Right-handed alpha
Helix 13
AB4
A
334 342Right-handed alpha
Helix 14
AB5
A
354 359Right-handed alpha
Helix 15
AB6
A
371 383Right-handed alpha
Helix 16
AB7
A
387 395Right-handed alpha
Helix 17
AB8
A
402 406Right-handed 310
Helix 18
AB9
A
409 421Right-handed alpha
Helix 19
AC1
A
422 426Right-handed 310
Helix 20
AC2
A
427 435Right-handed alpha
Helix 21
AC3
A
444 461Right-handed alpha
Helix 22
AC4
A
465 468Right-handed 310
Helix 23
AC5
A
469 474Right-handed alpha
Helix 24
AC6
A
475 484Right-handed alpha
Helix 25
AC7
A
486 494Right-handed alpha
Helix 26
AC8
A
511 518Right-handed alpha
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There are 4 sheets in PDB entry 8S6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
136 137anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
115 116anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 301first strand
Strand 2
A
316 317anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
369 370anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il