Analysis of interatomic Contacts of Structural Units in PDB entry:
8S6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S6D entry

There is 1 chain in PDB entry 8S6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 39ALA 523
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8S6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 74Right-handed 310
Helix 2
AA2
A
100 104Right-handed 310
Helix 3
AA3
A
150 154Right-handed 310
Helix 4
AA4
A
155 160Right-handed alpha
Helix 5
AA5
A
172 177Right-handed alpha
Helix 6
AA6
A
180 187Right-handed alpha
Helix 7
AA7
A
194 211Right-handed alpha
Helix 8
AA8
A
212 214Right-handed 310
Helix 9
AA9
A
227 237Right-handed alpha
Helix 10
AB1
A
238 243Right-handed 310
Helix 11
AB2
A
262 274Right-handed alpha
Helix 12
AB3
A
276 282Right-handed alpha
Helix 13
AB4
A
284 295Right-handed alpha
Helix 14
AB5
A
320 328Right-handed alpha
Helix 15
AB6
A
342 348Right-handed 310
Helix 16
AB7
A
355 368Right-handed alpha
Helix 17
AB8
A
370 378Right-handed alpha
Helix 18
AB9
A
385 399Right-handed alpha
Helix 19
AC1
A
399 413Right-handed alpha
Helix 20
AC2
A
438 444Right-handed alpha
Helix 21
AC3
A
462 483Right-handed alpha
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There are 2 sheets in PDB entry 8S6D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
48 51anti-parallel
Strand 3
A
87 89parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 64first strand
Strand 2
A
118 124anti-parallel
Strand 3
A
164 168anti-parallel
Strand 4
A
132 138parallel
Strand 5
A
216 226parallel
Strand 6
A
248 252parallel
Strand 7
A
334 340parallel
Strand 8
A
417 422parallel
Strand 9
A
501 504parallel
Strand 10
A
510 513anti-parallel
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