Analysis of interatomic Contacts of Structural Units in PDB entry:
8S6L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S6L entry

There is 1 chain in PDB entry 8S6L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLN 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8S6L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
37 51Right-handed alpha
Helix 3
AA3
A
53 55Right-handed 310
Helix 4
AA4
A
87 96Right-handed alpha
Helix 5
AA6
A
135 150Right-handed alpha
Helix 6
AA7
A
165 168Right-handed 310
Helix 7
AA9
A
176 197Right-handed alpha
Helix 8
AB1
A
208 212Right-handed 310
Helix 9
AB2
A
223 236Right-handed alpha
Helix 10
AB3
A
240 256Right-handed alpha
Helix 11
AB4
A
272 275Right-handed 310
Helix 12
AB5
A
301 318Right-handed alpha
Helix 13
AB6
A
320 332Right-handed alpha
Helix 14
AB7
A
335 338Right-handed 310
Helix 15
AB8
A
339 349Right-handed alpha
Helix 16
AB9
A
411 431Right-handed alpha
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There are 4 sheets in PDB entry 8S6L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
57 60anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
111 116parallel
Strand 3
A
122 129anti-parallel
Strand 4
A
25 33anti-parallel
Strand 5
A
372 374anti-parallel
Strand 6
A
377 380anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 221first strand
Strand 2
A
398 406anti-parallel
Strand 3
A
388 395anti-parallel
Strand 4
A
354 358parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 270first strand
Strand 2
A
288 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il