Analysis of interatomic Contacts of Structural Units in PDB entry:
8S6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S6Q entry

There are 2 chains in PDB entry 8S6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 12ALA 217
B
 MET 12ALA 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8S6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 69Right-handed alpha
Helix 2
AA2
A
81 93Right-handed alpha
Helix 3
AA3
A
103 106Right-handed 310
Helix 4
AA4
A
131 150Right-handed alpha
Helix 5
AA5
A
165 178Right-handed alpha
Helix 6
AA6
A
212 217Right-handed alpha
Helix 7
AA7
B
13 19Right-handed alpha
Helix 8
AA8
B
54 70Right-handed alpha
Helix 9
AA9
B
81 94Right-handed alpha
Helix 10
AB1
B
103 106Right-handed 310
Helix 11
AB2
B
131 149Right-handed alpha
Helix 12
AB3
B
165 177Right-handed alpha
Helix 13
AB4
B
211 216Right-handed 310
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There are 2 sheets in PDB entry 8S6Q. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
75 78parallel
Strand 3
A
159 164parallel
Strand 4
A
27 33parallel
Strand 5
A
193 199anti-parallel
Strand 6
A
202 205anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
75 78parallel
Strand 3
B
159 164parallel
Strand 4
B
27 33parallel
Strand 5
B
193 199anti-parallel
Strand 6
B
202 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il