Analysis of interatomic Contacts of Structural Units in PDB entry:
8S79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S79 entry

There are 4 chains in PDB entry 8S79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 280THR 563
B
 LYS 300THR 563
C
 VAL 3SER 116
D
 LEU 5SER 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8S79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
282 292Right-handed alpha
Helix 2
AA2
A
293 300Right-handed alpha
Helix 3
AA3
A
305 313Right-handed alpha
Helix 4
AA4
A
348 355Right-handed alpha
Helix 5
AA5
A
386 390Right-handed 310
Helix 6
AA6
A
403 424Right-handed alpha
Helix 7
AA7
A
435 437Right-handed 310
Helix 8
AA8
A
451 455Right-handed 310
Helix 9
AA9
A
464 481Right-handed alpha
Helix 10
AB1
A
492 506Right-handed alpha
Helix 11
AB2
A
509 518Right-handed alpha
Helix 12
AB3
A
519 523Right-handed 310
Helix 13
AB4
A
527 542Right-handed alpha
Helix 14
AB5
A
545 549Right-handed 310
Helix 15
AB6
A
551 560Right-handed alpha
Helix 16
AB7
B
305 313Right-handed alpha
Helix 17
AB8
B
343 355Right-handed alpha
Helix 18
AB9
B
387 393Right-handed alpha
Helix 19
AC1
B
403 424Right-handed alpha
Helix 20
AC2
B
435 437Right-handed 310
Helix 21
AC3
B
463 481Right-handed alpha
Helix 22
AC4
B
493 506Right-handed alpha
Helix 23
AC5
B
509 516Right-handed alpha
Helix 24
AC6
B
519 523Right-handed 310
Helix 25
AC7
B
527 542Right-handed alpha
Helix 26
AC8
B
551 560Right-handed alpha
Helix 27
AC9
C
88 92Right-handed 310
Helix 28
AD1
D
88 92Right-handed 310
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There are 10 sheets in PDB entry 8S79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
364 369parallel
Strand 3
A
374 380anti-parallel
Strand 4
A
334 342anti-parallel
Strand 5
A
326 331anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
A
456 458anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
447 449anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 323first strand
Strand 2
B
326 329anti-parallel
Strand 3
B
336 342anti-parallel
Strand 4
B
374 380anti-parallel
Strand 5
B
364 368anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 386first strand
Strand 2
B
439 441anti-parallel
Strand 3
B
447 449anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 430first strand
Strand 2
B
456 457anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 8first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
79 85anti-parallel
Strand 4
C
69 74anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 14first strand
Strand 2
C
110 115parallel
Strand 3
C
93 99anti-parallel
Strand 4
C
35 40anti-parallel
Strand 5
C
47 52anti-parallel
Strand 6
C
59 61anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 8first strand
Strand 2
D
18 24anti-parallel
Strand 3
D
79 85anti-parallel
Strand 4
D
69 74anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 14first strand
Strand 2
D
110 115parallel
Strand 3
D
93 99anti-parallel
Strand 4
D
35 40anti-parallel
Strand 5
D
47 52anti-parallel
Strand 6
D
59 61anti-parallel
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