Analysis of interatomic Contacts of Structural Units in PDB entry:
8S7E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S7E entry

There are 2 chains in PDB entry 8S7E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 16LYS 163
B
 SER 19LYS 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8S7E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 24Right-handed alpha
Helix 2
AA2
A
24 33Right-handed alpha
Helix 3
AA3
A
51 66Right-handed alpha
Helix 4
AA4
A
86 94Right-handed alpha
Helix 5
AA5
A
96 111Right-handed alpha
Helix 6
AA6
A
112 128Right-handed alpha
Helix 7
AA7
A
131 139Right-handed alpha
Helix 8
AA8
A
146 157Right-handed alpha
Helix 9
AA9
A
158 162Right-handed 310
Helix 10
AB1
B
26 36Right-handed alpha
Helix 11
AB2
B
38 47Right-handed alpha
Helix 12
AB3
B
49 62Right-handed alpha
Helix 13
AB4
B
82 92Right-handed alpha
Helix 14
AB5
B
130 139Right-handed alpha
Helix 15
AB6
B
202 209Right-handed alpha
Helix 16
AB7
B
236 245Right-handed alpha
Helix 17
AB8
B
298 312Right-handed alpha
Helix 18
AB9
B
339 349Right-handed alpha
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There are 4 sheets in PDB entry 8S7E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
99 107parallel
Strand 3
B
176 180anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
99 107parallel
Strand 3
B
148 150parallel
Strand 4
B
257 258anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 168first strand
Strand 2
B
152 155anti-parallel
Strand 3
B
354 359anti-parallel
Strand 4
B
319 326parallel
Strand 5
B
392 398anti-parallel
Strand 6
B
286 291anti-parallel
Strand 7
B
368 370anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 192first strand
Strand 2
B
275 281anti-parallel
Strand 3
B
217 225anti-parallel
Strand 4
B
249 255parallel
Strand 5
B
362 363anti-parallel
Strand 6
B
387 388anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il