Analysis of interatomic Contacts of Structural Units in PDB entry:
8S7L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S7L entry

There are 3 chains in PDB entry 8S7L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 89ASP 331
B
 ARG 89ASN 328
C
 ARG 89ASN 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8S7L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 108Right-handed alpha
Helix 2
AA2
A
112 125Right-handed alpha
Helix 3
AA3
A
214 218Right-handed 310
Helix 4
AA4
A
228 247Right-handed alpha
Helix 5
AA5
A
249 257Right-handed alpha
Helix 6
AA6
A
327 331Right-handed 310
Helix 7
AA7
B
93 108Right-handed alpha
Helix 8
AA8
B
114 125Right-handed alpha
Helix 9
AA9
B
214 218Right-handed 310
Helix 10
AB1
B
228 247Right-handed alpha
Helix 11
AB2
B
249 257Right-handed alpha
Helix 12
AB3
C
93 108Right-handed alpha
Helix 13
AB4
C
112 125Right-handed alpha
Helix 14
AB5
C
214 218Right-handed 310
Helix 15
AB6
C
228 247Right-handed alpha
Helix 16
AB7
C
249 257Right-handed alpha
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There are 9 sheets in PDB entry 8S7L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
C
143 154anti-parallel
Strand 3
C
157 169anti-parallel
Strand 4
C
174 190anti-parallel
Strand 5
C
193 196anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
C
143 154anti-parallel
Strand 3
C
157 169anti-parallel
Strand 4
C
174 190anti-parallel
Strand 5
C
201 203anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
175 190anti-parallel
Strand 3
A
201 203anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
175 190anti-parallel
Strand 3
A
157 168anti-parallel
Strand 4
A
143 154anti-parallel
Strand 5
B
91 92anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 279first strand
Strand 2
A
282 293anti-parallel
Strand 3
A
296 309anti-parallel
Strand 4
A
312 319anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 196first strand
Strand 2
B
175 190anti-parallel
Strand 3
B
201 203anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 196first strand
Strand 2
B
175 190anti-parallel
Strand 3
B
157 168anti-parallel
Strand 4
B
143 154anti-parallel
Strand 5
C
91 92anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 279first strand
Strand 2
B
282 293anti-parallel
Strand 3
B
296 309anti-parallel
Strand 4
B
312 319anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
267 279first strand
Strand 2
C
282 293anti-parallel
Strand 3
C
296 309anti-parallel
Strand 4
C
312 319anti-parallel
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