Analysis of interatomic Contacts of Structural Units in PDB entry:
8S7V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S7V entry

There are 22 chains in PDB entry 8S7V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LEU 260
B	ALA 2	LEU 260
E	VAL 2	PHE 443
D	VAL 2	PHE 443
C	GLU 4	LYS 260
C	ALA 262	ARG 274
C	ALA 276	SER 402
C	ARG 404	TYR 447
C	TYR 449	GLN 454
C	GLY 456	LYS 553
G	ALA 2	LYS 184
F	ARG 6	LYS 260
F	ALA 262	ARG 274
F	ALA 276	SER 402
F	ARG 404	TYR 447
F	TYR 449	GLN 454
F	GLY 456	LYS 553
H	MET 1	GLU 296
I	ARG 5	GLY 198
K	MET 1	SER 521
J	MET 1	ASN 499
L	ILE 10	GLU 56

There are185 helices in PDB entry 8S7V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	23	Right-handed alpha
Helix 2	AA2	A	35	44	Right-handed alpha
Helix 3	AA3	A	67	72	Right-handed alpha
Helix 4	AA4	A	76	81	Right-handed alpha
Helix 5	AA5	A	100	112	Right-handed alpha
Helix 6	AA6	A	130	141	Right-handed alpha
Helix 7	AA7	A	210	218	Right-handed alpha
Helix 8	AA8	A	227	230	Right-handed 310
Helix 9	AA9	A	231	251	Right-handed alpha
Helix 10	AB1	A	255	260	Right-handed 310
Helix 11	AB2	B	12	23	Right-handed alpha
Helix 12	AB3	B	35	44	Right-handed alpha
Helix 13	AB4	B	69	73	Right-handed 310
Helix 14	AB5	B	76	82	Right-handed alpha
Helix 15	AB6	B	100	112	Right-handed alpha
Helix 16	AB7	B	130	140	Right-handed alpha
Helix 17	AB8	B	210	218	Right-handed alpha
Helix 18	AB9	B	227	230	Right-handed 310
Helix 19	AC1	B	231	251	Right-handed alpha
Helix 20	AC2	B	255	260	Right-handed 310
Helix 21	AC3	E	25	28	Right-handed 310
Helix 22	AC4	E	32	44	Right-handed alpha
Helix 23	AC5	E	49	60	Right-handed alpha
Helix 24	AC6	E	77	82	Right-handed alpha
Helix 25	AC7	E	83	94	Right-handed alpha
Helix 26	AC8	E	118	123	Right-handed alpha
Helix 27	AC9	E	128	146	Right-handed alpha
Helix 28	AD1	E	149	151	Right-handed 310
Helix 29	AD2	E	152	161	Right-handed alpha
Helix 30	AD3	E	181	185	Right-handed 310
Helix 31	AD4	E	196	204	Right-handed alpha
Helix 32	AD5	E	207	226	Right-handed alpha
Helix 33	AD6	E	230	232	Right-handed 310
Helix 34	AD7	E	233	245	Right-handed alpha
Helix 35	AD8	E	247	249	Right-handed 310
Helix 36	AD9	E	250	259	Right-handed alpha
Helix 37	AE1	E	263	278	Right-handed alpha
Helix 38	AE2	E	298	322	Right-handed alpha
Helix 39	AE3	E	326	343	Right-handed alpha
Helix 40	AE4	E	346	349	Right-handed 310
Helix 41	AE5	E	350	364	Right-handed alpha
Helix 42	AE6	E	371	375	Right-handed 310
Helix 43	AE7	E	390	399	Right-handed alpha
Helix 44	AE8	E	407	412	Right-handed alpha
Helix 45	AE9	E	412	420	Right-handed alpha
Helix 46	AF1	E	422	427	Right-handed alpha
Helix 47	AF2	E	427	439	Right-handed alpha
Helix 48	AF3	D	25	28	Right-handed 310
Helix 49	AF4	D	32	44	Right-handed alpha
Helix 50	AF5	D	50	60	Right-handed alpha
Helix 51	AF6	D	81	94	Right-handed alpha
Helix 52	AF7	D	118	123	Right-handed alpha
Helix 53	AF8	D	128	146	Right-handed alpha
Helix 54	AF9	D	149	151	Right-handed 310
Helix 55	AG1	D	152	161	Right-handed alpha
Helix 56	AG2	D	181	185	Right-handed 310
Helix 57	AG3	D	190	194	Right-handed 310
Helix 58	AG4	D	196	204	Right-handed alpha
Helix 59	AG5	D	207	226	Right-handed alpha
Helix 60	AG6	D	230	232	Right-handed 310
Helix 61	AG7	D	233	244	Right-handed alpha
Helix 62	AG8	D	250	259	Right-handed alpha
Helix 63	AG9	D	263	278	Right-handed alpha
Helix 64	AH1	D	298	322	Right-handed alpha
Helix 65	AH2	D	326	343	Right-handed alpha
Helix 66	AH3	D	350	363	Right-handed alpha
Helix 67	AH4	D	371	375	Right-handed 310
Helix 68	AH5	D	389	400	Right-handed alpha
Helix 69	AH6	D	407	412	Right-handed alpha
Helix 70	AH7	D	413	420	Right-handed alpha
Helix 71	AH8	D	422	427	Right-handed alpha
Helix 72	AH9	D	427	439	Right-handed alpha
Helix 73	AI1	D	440	443	Right-handed 310
Helix 74	AI2	C	8	16	Right-handed alpha
Helix 75	AI3	C	31	35	Right-handed 310
Helix 76	AI4	C	36	53	Right-handed alpha
Helix 77	AI5	C	86	91	Right-handed 310
Helix 78	AI6	C	95	107	Right-handed alpha
Helix 79	AI7	C	114	122	Right-handed alpha
Helix 80	AI8	C	129	144	Right-handed alpha
Helix 81	AI9	C	158	163	Right-handed 310
Helix 82	AJ1	C	173	180	Right-handed alpha
Helix 83	AJ2	C	181	185	Right-handed 310
Helix 84	AJ3	C	187	192	Right-handed alpha
Helix 85	AJ4	C	193	205	Right-handed alpha
Helix 86	AJ5	C	215	222	Right-handed alpha
Helix 87	AJ6	C	225	243	Right-handed alpha
Helix 88	AJ7	C	248	261	Right-handed alpha
Helix 89	AJ8	C	272	276	Right-handed 310
Helix 90	AJ9	C	281	285	Right-handed 310
Helix 91	AK1	C	286	294	Right-handed alpha
Helix 92	AK2	C	302	319	Right-handed alpha
Helix 93	AK3	C	333	339	Right-handed alpha
Helix 94	AK4	C	344	361	Right-handed alpha
Helix 95	AK5	C	369	391	Right-handed alpha
Helix 96	AK6	C	391	398	Right-handed alpha
Helix 97	AK7	C	405	421	Right-handed alpha
Helix 98	AK8	C	422	442	Right-handed alpha
Helix 99	AK9	C	450	461	Right-handed alpha
Helix 100	AL1	C	470	474	Right-handed 310
Helix 101	AL2	C	478	482	Right-handed 310
Helix 102	AL3	C	487	501	Right-handed alpha
Helix 103	AL4	C	509	516	Right-handed alpha
Helix 104	AL5	C	527	537	Right-handed alpha
Helix 105	AL6	C	546	550	Right-handed 310
Helix 106	AL7	G	10	28	Right-handed alpha
Helix 107	AL8	G	126	140	Right-handed alpha
Helix 108	AL9	G	166	182	Right-handed alpha
Helix 109	AM1	F	7	16	Right-handed alpha
Helix 110	AM2	F	19	24	Right-handed alpha
Helix 111	AM3	F	24	29	Right-handed alpha
Helix 112	AM4	F	69	74	Right-handed alpha
Helix 113	AM5	F	87	91	Right-handed 310
Helix 114	AM6	F	95	107	Right-handed alpha
Helix 115	AM7	F	114	123	Right-handed alpha
Helix 116	AM8	F	129	144	Right-handed alpha
Helix 117	AM9	F	158	163	Right-handed 310
Helix 118	AN1	F	173	179	Right-handed alpha
Helix 119	AN2	F	187	192	Right-handed alpha
Helix 120	AN3	F	193	205	Right-handed alpha
Helix 121	AN4	F	215	222	Right-handed alpha
Helix 122	AN5	F	225	243	Right-handed alpha
Helix 123	AN6	F	249	261	Right-handed alpha
Helix 124	AN7	F	281	285	Right-handed 310
Helix 125	AN8	F	286	294	Right-handed alpha
Helix 126	AN9	F	295	299	Right-handed 310
Helix 127	AO1	F	302	318	Right-handed alpha
Helix 128	AO2	F	334	339	Right-handed alpha
Helix 129	AO3	F	344	361	Right-handed alpha
Helix 130	AO4	F	369	391	Right-handed alpha
Helix 131	AO5	F	391	398	Right-handed alpha
Helix 132	AO6	F	400	421	Right-handed alpha
Helix 133	AO7	F	422	442	Right-handed alpha
Helix 134	AO8	F	450	461	Right-handed alpha
Helix 135	AO9	F	487	501	Right-handed alpha
Helix 136	AP1	F	509	517	Right-handed alpha
Helix 137	AP2	F	527	537	Right-handed alpha
Helix 138	AP3	H	13	24	Right-handed alpha
Helix 139	AP4	H	48	59	Right-handed alpha
Helix 140	AP5	H	88	98	Right-handed alpha
Helix 141	AP6	H	120	129	Right-handed alpha
Helix 142	AP7	H	140	146	Right-handed alpha
Helix 143	AP8	H	147	151	Right-handed 310
Helix 144	AP9	H	185	213	Right-handed alpha
Helix 145	AQ1	H	218	230	Right-handed alpha
Helix 146	AQ2	H	232	236	Right-handed 310
Helix 147	AQ3	H	254	264	Right-handed alpha
Helix 148	AQ4	H	272	275	Right-handed alpha
Helix 149	AQ5	I	53	64	Right-handed alpha
Helix 150	AQ6	I	95	104	Right-handed alpha
Helix 151	AQ7	I	115	128	Right-handed alpha
Helix 152	AQ8	I	143	151	Right-handed 310
Helix 153	AQ9	I	182	196	Right-handed alpha
Helix 154	AR1	K	41	51	Right-handed alpha
Helix 155	AR2	K	77	81	Right-handed 310
Helix 156	AR3	K	104	111	Right-handed alpha
Helix 157	AR4	K	128	139	Right-handed alpha
Helix 158	AR5	K	144	157	Right-handed alpha
Helix 159	AR6	K	166	171	Right-handed 310
Helix 160	AR7	K	172	185	Right-handed alpha
Helix 161	AR8	K	201	216	Right-handed alpha
Helix 162	AR9	K	217	220	Right-handed 310
Helix 163	AS1	K	229	237	Right-handed alpha
Helix 164	AS2	K	254	264	Right-handed alpha
Helix 165	AS3	K	323	332	Right-handed alpha
Helix 166	AS4	K	361	366	Right-handed alpha
Helix 167	AS5	K	382	389	Right-handed alpha
Helix 168	AS6	K	396	412	Right-handed alpha
Helix 169	AS7	K	414	422	Right-handed alpha
Helix 170	AS8	K	425	429	Right-handed 310
Helix 171	AS9	K	433	445	Right-handed alpha
Helix 172	AT1	K	460	479	Right-handed alpha
Helix 173	AT2	K	488	496	Right-handed alpha
Helix 174	AT3	K	512	521	Right-handed alpha
Helix 175	AT4	J	14	22	Right-handed alpha
Helix 176	AT5	J	65	74	Right-handed alpha
Helix 177	AT6	J	117	125	Right-handed 310
Helix 178	AT7	J	151	158	Right-handed alpha
Helix 179	AT8	J	206	217	Right-handed alpha
Helix 180	AT9	J	290	295	Right-handed alpha
Helix 181	AU1	J	316	326	Right-handed alpha
Helix 182	AU2	J	350	358	Right-handed alpha
Helix 183	AU3	J	380	392	Right-handed alpha
Helix 184	AU4	J	467	469	Right-handed 310
Helix 185	AU5	L	48	50	Right-handed 310

There are 33 sheets in PDB entry 8S7V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	124	129	anti-parallel
Strand 3	A	85	92	anti-parallel
Strand 4	A	152	153	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	181	first strand
Strand 2	A	188	192	anti-parallel
Strand 3	A	198	206	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	123	129	anti-parallel
Strand 3	B	85	92	anti-parallel
Strand 4	B	152	154	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	182	first strand
Strand 2	B	187	192	anti-parallel
Strand 3	B	198	204	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	11	first strand
Strand 2	E	17	23	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	106	first strand
Strand 2	E	111	115	anti-parallel
Strand 3	E	45	48	anti-parallel
Strand 4	E	175	176	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	287	first strand
Strand 2	E	290	296	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	11	first strand
Strand 2	D	17	23	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	106	first strand
Strand 2	D	111	115	anti-parallel
Strand 3	D	45	49	anti-parallel
Strand 4	D	175	176	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	286	first strand
Strand 2	D	292	296	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	81	85	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	171	first strand
Strand 2	C	208	213	anti-parallel
Strand 3	C	108	112	anti-parallel
Strand 4	C	264	266	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	34	42	parallel
Strand 3	G	47	54	anti-parallel
Strand 4	G	156	161	anti-parallel
Strand 5	G	146	151	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	77	first strand
Strand 2	F	84	85	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	166	171	first strand
Strand 2	F	208	213	anti-parallel
Strand 3	F	108	112	anti-parallel
Strand 4	F	264	266	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	33	first strand
Strand 2	H	37	45	anti-parallel
Strand 3	H	2	10	anti-parallel
Strand 4	H	62	64	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	172	173	first strand
Strand 2	H	157	160	parallel
Strand 3	H	132	136	parallel
Strand 4	H	72	77	parallel
Strand 5	H	102	107	parallel
Strand 6	I	8	11	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	242	244	first strand
Strand 2	H	248	251	anti-parallel
Strand 3	H	287	291	anti-parallel
Strand 4	H	276	280	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	266	267	first strand
Strand 2	H	270	271	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	31	first strand
Strand 2	I	68	72	anti-parallel
Strand 3	I	38	42	parallel
Strand 4	I	107	111	parallel
Strand 5	I	134	138	parallel
Strand 6	I	168	173	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	79	80	first strand
Strand 2	I	91	92	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	22	27	first strand
Strand 2	K	2	9	anti-parallel
Strand 3	K	62	66	anti-parallel
Strand 4	K	94	97	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	112	115	first strand
Strand 2	K	190	194	parallel
Strand 3	K	222	226	parallel
Strand 4	K	31	36	parallel
Strand 5	K	239	244	parallel
Strand 6	K	247	253	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	296	308	first strand
Strand 2	K	281	292	anti-parallel
Strand 3	K	342	345	anti-parallel
Strand 4	K	350	352	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	368	371	first strand
Strand 2	K	449	453	parallel
Strand 3	K	481	485	parallel
Strand 4	K	313	318	parallel
Strand 5	K	500	502	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	177	182	first strand
Strand 2	J	30	36	anti-parallel
Strand 3	J	194	196	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	47	first strand
Strand 2	J	58	59	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	113	114	first strand
Strand 2	J	128	129	anti-parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	221	224	first strand
Strand 2	J	299	305	anti-parallel
Strand 3	J	199	203	parallel
Strand 4	J	280	286	anti-parallel
Strand 5	J	254	258	anti-parallel
Strand 6	J	267	270	anti-parallel
Strand 7	J	231	234	anti-parallel
Strand 8	J	226	227	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	330	333	first strand
Strand 2	J	359	365	parallel
Strand 3	J	342	347	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	371	375	first strand
Strand 2	J	471	477	anti-parallel
Strand 3	J	437	441	anti-parallel
Strand 4	J	451	454	anti-parallel
Strand 5	J	410	413	anti-parallel
Strand 6	J	398	407	anti-parallel
Strand 7	J	492	497	anti-parallel
Strand 8	J	371	375	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	24	26	first strand
Strand 2	L	15	18	anti-parallel
Strand 3	L	52	54	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	30	first strand
Strand 2	L	39	40	anti-parallel
Strand 3	L	46	47	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S7V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S7V