Analysis of interatomic Contacts of Structural Units in PDB entry:
8S82

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S82 entry

There are 4 chains in PDB entry 8S82 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	ILE 1	ASN 557
L	SER 1	VAL 587
D	G 1	T 21
C	A 1	C 21

There are 36 helices in PDB entry 8S82. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	12	17	Right-handed alpha
Helix 2	AA2	K	26	43	Right-handed alpha
Helix 3	AA3	K	77	93	Right-handed alpha
Helix 4	AA4	K	97	102	Right-handed alpha
Helix 5	AA5	K	114	128	Right-handed alpha
Helix 6	AA6	K	150	154	Right-handed 310
Helix 7	AA7	K	156	172	Right-handed alpha
Helix 8	AA8	K	190	198	Right-handed alpha
Helix 9	AA9	K	225	232	Right-handed alpha
Helix 10	AB1	K	267	270	Right-handed 310
Helix 11	AB2	K	318	328	Right-handed alpha
Helix 12	AB3	K	369	384	Right-handed alpha
Helix 13	AB4	K	443	461	Right-handed alpha
Helix 14	AB5	K	468	472	Right-handed 310
Helix 15	AB6	K	474	490	Right-handed alpha
Helix 16	AB7	K	500	512	Right-handed alpha
Helix 17	AB8	K	513	529	Right-handed alpha
Helix 18	AB9	K	537	555	Right-handed alpha
Helix 19	AC1	L	12	18	Right-handed alpha
Helix 20	AC2	L	19	39	Right-handed alpha
Helix 21	AC3	L	75	93	Right-handed alpha
Helix 22	AC4	L	104	121	Right-handed alpha
Helix 23	AC5	L	142	153	Right-handed alpha
Helix 24	AC6	L	174	182	Right-handed alpha
Helix 25	AC7	L	190	199	Right-handed alpha
Helix 26	AC8	L	220	225	Right-handed alpha
Helix 27	AC9	L	308	310	Right-handed 310
Helix 28	AD1	L	326	334	Right-handed alpha
Helix 29	AD2	L	353	357	Right-handed 310
Helix 30	AD3	L	372	389	Right-handed alpha
Helix 31	AD4	L	467	480	Right-handed alpha
Helix 32	AD5	L	498	501	Right-handed 310
Helix 33	AD6	L	512	516	Right-handed 310
Helix 34	AD7	L	527	545	Right-handed alpha
Helix 35	AD8	L	558	564	Right-handed alpha
Helix 36	AD9	L	576	583	Right-handed alpha

There are 7 sheets in PDB entry 8S82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	68	75	first strand
Strand 2	K	49	56	anti-parallel
Strand 3	K	3	10	parallel
Strand 4	K	138	145	parallel
Strand 5	K	174	182	parallel
Strand 6	K	221	222	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	239	248	first strand
Strand 2	K	253	261	anti-parallel
Strand 3	K	358	362	anti-parallel
Strand 4	K	417	421	anti-parallel
Strand 5	K	401	407	anti-parallel
Strand 6	K	386	393	anti-parallel
Strand 7	K	335	343	anti-parallel
Strand 8	K	239	248	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	302	307	first strand
Strand 2	L	281	286	anti-parallel
Strand 3	K	281	286	anti-parallel
Strand 4	K	272	278	anti-parallel
Strand 5	L	312	318	anti-parallel
Strand 6	L	321	323	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	314	315	first strand
Strand 2	K	305	309	anti-parallel
Strand 3	L	258	262	anti-parallel
Strand 4	L	272	274	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	430	431	first strand
Strand 2	L	495	496	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	64	71	first strand
Strand 2	L	43	50	anti-parallel
Strand 3	L	3	10	parallel
Strand 4	L	128	133	parallel
Strand 5	L	156	161	parallel
Strand 6	L	186	189	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	211	217	first strand
Strand 2	L	239	247	anti-parallel
Strand 3	L	362	366	anti-parallel
Strand 4	L	425	435	anti-parallel
Strand 5	L	406	417	anti-parallel
Strand 6	L	391	398	anti-parallel
Strand 7	L	340	348	anti-parallel
Strand 8	L	211	217	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S82

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S82