Analysis of interatomic Contacts of Structural Units in PDB entry:
8S86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S86 entry

There are 2 chains in PDB entry 8S86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 79LEU 490
B
 ASP 79LEU 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8S86. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 116Right-handed alpha
Helix 2
AA2
A
130 135Right-handed alpha
Helix 3
AA3
A
138 140Right-handed 310
Helix 4
AA4
A
141 158Right-handed alpha
Helix 5
AA5
A
176 184Right-handed alpha
Helix 6
AA6
A
191 196Right-handed alpha
Helix 7
AA7
A
221 226Right-handed alpha
Helix 8
AA8
A
237 255Right-handed alpha
Helix 9
AA9
A
266 270Right-handed 310
Helix 10
AB1
A
282 286Right-handed 310
Helix 11
AB2
A
296 300Right-handed 310
Helix 12
AB3
A
307 318Right-handed alpha
Helix 13
AB4
A
343 357Right-handed alpha
Helix 14
AB5
A
372 383Right-handed alpha
Helix 15
AB6
A
436 438Right-handed 310
Helix 16
AB7
A
454 470Right-handed alpha
Helix 17
AB8
A
479 484Right-handed alpha
Helix 18
AB9
B
104 116Right-handed alpha
Helix 19
AC1
B
130 135Right-handed alpha
Helix 20
AC2
B
138 140Right-handed 310
Helix 21
AC3
B
141 158Right-handed alpha
Helix 22
AC4
B
176 184Right-handed alpha
Helix 23
AC5
B
191 197Right-handed alpha
Helix 24
AC6
B
220 226Right-handed alpha
Helix 25
AC7
B
237 255Right-handed alpha
Helix 26
AC8
B
266 270Right-handed 310
Helix 27
AC9
B
282 286Right-handed 310
Helix 28
AD1
B
296 300Right-handed 310
Helix 29
AD2
B
307 318Right-handed alpha
Helix 30
AD3
B
343 356Right-handed alpha
Helix 31
AD4
B
373 383Right-handed alpha
Helix 32
AD5
B
436 438Right-handed 310
Helix 33
AD6
B
454 470Right-handed alpha
Helix 34
AD7
B
479 484Right-handed 310
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There are 9 sheets in PDB entry 8S86. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 88first strand
Strand 2
A
229 235anti-parallel
Strand 3
A
211 215anti-parallel
Strand 4
A
204 207anti-parallel
Strand 5
A
119 124anti-parallel
Strand 6
A
160 166parallel
Strand 7
A
186 190parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
219 220parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 281first strand
Strand 2
A
288 294anti-parallel
Strand 3
A
305 306parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 281first strand
Strand 2
A
288 294anti-parallel
Strand 3
A
444 449anti-parallel
Strand 4
A
426 429anti-parallel
Strand 5
A
418 422anti-parallel
Strand 6
A
321 326anti-parallel
Strand 7
A
359 365parallel
Strand 8
A
392 398parallel
Strand 9
A
473 475anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
433 434parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 88first strand
Strand 2
B
229 235anti-parallel
Strand 3
B
211 215anti-parallel
Strand 4
B
203 207anti-parallel
Strand 5
B
120 124anti-parallel
Strand 6
B
162 166parallel
Strand 7
B
186 190parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 281first strand
Strand 2
B
288 294anti-parallel
Strand 3
B
305 306parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 281first strand
Strand 2
B
288 294anti-parallel
Strand 3
B
444 449anti-parallel
Strand 4
B
426 429anti-parallel
Strand 5
B
418 422anti-parallel
Strand 6
B
321 326anti-parallel
Strand 7
B
359 365parallel
Strand 8
B
392 398parallel
Strand 9
B
473 475anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 330first strand
Strand 2
B
433 434parallel
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