Analysis of interatomic Contacts of Structural Units in PDB entry:
8S8P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S8P entry

There are 5 chains in PDB entry 8S8P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	A 1	C 21
D	G 1	T 21
K	ILE 28	ASN 584
L	SER 2	VAL 588
R	LYS 360	ASN 601

There are 43 helices in PDB entry 8S8P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	39	44	Right-handed alpha
Helix 2	AA2	K	53	73	Right-handed alpha
Helix 3	AA3	K	90	94	Right-handed 310
Helix 4	AA4	K	104	120	Right-handed alpha
Helix 5	AA5	K	124	130	Right-handed alpha
Helix 6	AA6	K	141	153	Right-handed alpha
Helix 7	AA7	K	177	181	Right-handed 310
Helix 8	AA8	K	183	199	Right-handed alpha
Helix 9	AA9	K	217	225	Right-handed alpha
Helix 10	AB1	K	252	259	Right-handed alpha
Helix 11	AB2	K	345	354	Right-handed alpha
Helix 12	AB3	K	396	409	Right-handed alpha
Helix 13	AB4	K	470	488	Right-handed alpha
Helix 14	AB5	K	495	499	Right-handed 310
Helix 15	AB6	K	501	516	Right-handed alpha
Helix 16	AB7	K	527	539	Right-handed alpha
Helix 17	AB8	K	539	558	Right-handed alpha
Helix 18	AB9	K	564	584	Right-handed alpha
Helix 19	AC1	L	13	19	Right-handed alpha
Helix 20	AC2	L	20	38	Right-handed alpha
Helix 21	AC3	L	76	94	Right-handed alpha
Helix 22	AC4	L	106	121	Right-handed alpha
Helix 23	AC5	L	143	154	Right-handed alpha
Helix 24	AC6	L	175	183	Right-handed alpha
Helix 25	AC7	L	191	200	Right-handed alpha
Helix 26	AC8	L	327	334	Right-handed alpha
Helix 27	AC9	L	354	358	Right-handed 310
Helix 28	AD1	L	373	391	Right-handed alpha
Helix 29	AD2	L	467	481	Right-handed alpha
Helix 30	AD3	L	497	501	Right-handed 310
Helix 31	AD4	L	513	517	Right-handed 310
Helix 32	AD5	L	529	547	Right-handed alpha
Helix 33	AD6	L	559	566	Right-handed alpha
Helix 34	AD7	L	576	584	Right-handed alpha
Helix 35	AD8	R	365	378	Right-handed alpha
Helix 36	AD9	R	379	382	Right-handed 310
Helix 37	AE1	R	385	395	Right-handed alpha
Helix 38	AE2	R	399	410	Right-handed alpha
Helix 39	AE3	R	411	415	Right-handed 310
Helix 40	AE4	R	450	471	Right-handed alpha
Helix 41	AE5	R	521	534	Right-handed alpha
Helix 42	AE6	R	537	553	Right-handed alpha
Helix 43	AE7	R	553	567	Right-handed alpha

There are 11 sheets in PDB entry 8S8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	95	102	first strand
Strand 2	K	76	83	anti-parallel
Strand 3	K	30	37	parallel
Strand 4	K	166	172	parallel
Strand 5	K	201	209	parallel
Strand 6	K	248	249	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	266	269	first strand
Strand 2	K	284	288	anti-parallel
Strand 3	K	385	389	anti-parallel
Strand 4	K	444	449	anti-parallel
Strand 5	K	428	434	anti-parallel
Strand 6	K	413	420	anti-parallel
Strand 7	K	362	370	anti-parallel
Strand 8	K	272	275	parallel
Strand 9	K	280	282	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	308	311	first strand
Strand 2	K	301	305	anti-parallel
Strand 3	L	314	315	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	313	319	first strand
Strand 2	L	277	286	anti-parallel
Strand 3	L	304	308	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	341	342	first strand
Strand 2	K	332	336	anti-parallel
Strand 3	L	259	264	anti-parallel
Strand 4	L	272	275	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	394	395	first strand
Strand 2	L	586	587	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	72	first strand
Strand 2	L	44	51	anti-parallel
Strand 3	L	4	11	parallel
Strand 4	L	127	134	parallel
Strand 5	L	157	162	parallel
Strand 6	L	187	190	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	248	250	first strand
Strand 2	L	362	367	anti-parallel
Strand 3	L	428	436	anti-parallel
Strand 4	L	407	416	anti-parallel
Strand 5	L	392	399	anti-parallel
Strand 6	L	341	349	anti-parallel
Strand 7	L	212	218	parallel
Strand 8	L	240	246	anti-parallel
Strand 9	L	362	367	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	317	319	first strand
Strand 2	L	322	324	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	418	419	first strand
Strand 2	R	437	438	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	478	479	first strand
Strand 2	R	495	496	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S8P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S8P