Analysis of interatomic Contacts of Structural Units in PDB entry:
8S8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S8Q entry

There are 4 chains in PDB entry 8S8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 189GLN 348
D
 G 5 A 28
B
 SER 189LEU 350
C
 T 5 T 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8S8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
209 235Right-handed alpha
Helix 2
AA2
A
243 253Right-handed alpha
Helix 3
AA3
A
259 276Right-handed alpha
Helix 4
AA4
A
276 291Right-handed alpha
Helix 5
AA5
A
293 301Right-handed alpha
Helix 6
AA6
A
301 313Right-handed alpha
Helix 7
AA7
A
315 323Right-handed alpha
Helix 8
AA8
A
332 347Right-handed alpha
Helix 9
AA9
B
210 234Right-handed alpha
Helix 10
AB1
B
243 253Right-handed alpha
Helix 11
AB2
B
259 276Right-handed alpha
Helix 12
AB3
B
276 289Right-handed alpha
Helix 13
AB4
B
293 301Right-handed alpha
Helix 14
AB5
B
302 311Right-handed alpha
Helix 15
AB6
B
315 323Right-handed alpha
Helix 16
AB7
B
332 341Right-handed alpha
Helix 17
AB8
B
341 346Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8S8Q.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 195first strand
Strand 2
B
208 209parallel
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