Analysis of interatomic Contacts of Structural Units in PDB entry:
8S9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S9D entry

There is 1 chain in PDB entry 8S9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6ALA 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 8S9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 45Right-handed alpha
Helix 2
AA2
A
48 59Right-handed alpha
Helix 3
AA3
A
79 90Right-handed alpha
Helix 4
AA4
A
90 96Right-handed alpha
Helix 5
AA5
A
99 103Right-handed 310
Helix 6
AA6
A
104 129Right-handed alpha
Helix 7
AA7
A
136 141Right-handed alpha
Helix 8
AA8
A
145 156Right-handed alpha
Helix 9
AA9
A
159 173Right-handed alpha
Helix 10
AB1
A
179 191Right-handed alpha
Helix 11
AB2
A
194 207Right-handed alpha
Helix 12
AB3
A
208 212Right-handed 310
Helix 13
AB4
A
214 216Right-handed 310
Helix 14
AB5
A
217 225Right-handed alpha
Helix 15
AB6
A
230 241Right-handed alpha
Helix 16
AB7
A
257 271Right-handed alpha
Helix 17
AB8
A
274 293Right-handed alpha
Helix 18
AB9
A
301 313Right-handed alpha
Helix 19
AC1
A
316 318Right-handed 310
Helix 20
AC2
A
319 343Right-handed alpha
Helix 21
AC3
A
359 363Right-handed 310
Helix 22
AC4
A
365 373Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8S9D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
31 34anti-parallel
Strand 3
A
37 38anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
298 300anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il