Analysis of interatomic Contacts of Structural Units in PDB entry:
8S9G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S9G entry

There are 4 chains in PDB entry 8S9G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 19	ASN 599
E	ASN 334	GLY 526
H	VAL 2	VAL 125
L	ILE 2	VAL 104

There are 46 helices in PDB entry 8S9G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	52	Right-handed alpha
Helix 2	AA2	A	55	77	Right-handed alpha
Helix 3	AA3	A	78	83	Right-handed 310
Helix 4	AA4	A	84	88	Right-handed 310
Helix 5	AA5	A	90	99	Right-handed alpha
Helix 6	AA6	A	109	129	Right-handed alpha
Helix 7	AA7	A	147	154	Right-handed alpha
Helix 8	AA8	A	157	172	Right-handed alpha
Helix 9	AA9	A	173	175	Right-handed 310
Helix 10	AB1	A	176	194	Right-handed alpha
Helix 11	AB2	A	198	205	Right-handed alpha
Helix 12	AB3	A	206	208	Right-handed 310
Helix 13	AB4	A	220	249	Right-handed alpha
Helix 14	AB5	A	265	267	Right-handed 310
Helix 15	AB6	A	275	279	Right-handed 310
Helix 16	AB7	A	293	300	Right-handed alpha
Helix 17	AB8	A	303	317	Right-handed alpha
Helix 18	AB9	A	324	331	Right-handed alpha
Helix 19	AC1	A	365	383	Right-handed alpha
Helix 20	AC2	A	384	388	Right-handed 310
Helix 21	AC3	A	389	393	Right-handed 310
Helix 22	AC4	A	399	413	Right-handed alpha
Helix 23	AC5	A	414	421	Right-handed alpha
Helix 24	AC6	A	431	447	Right-handed alpha
Helix 25	AC7	A	449	465	Right-handed alpha
Helix 26	AC8	A	469	471	Right-handed 310
Helix 27	AC9	A	472	484	Right-handed alpha
Helix 28	AD1	A	498	502	Right-handed 310
Helix 29	AD2	A	503	508	Right-handed alpha
Helix 30	AD3	A	513	533	Right-handed alpha
Helix 31	AD4	A	538	542	Right-handed 310
Helix 32	AD5	A	547	559	Right-handed alpha
Helix 33	AD6	A	565	575	Right-handed alpha
Helix 34	AD7	A	581	588	Right-handed alpha
Helix 35	AD8	A	588	597	Right-handed alpha
Helix 36	AD9	E	338	343	Right-handed alpha
Helix 37	AE1	E	366	370	Right-handed 310
Helix 38	AE2	E	386	390	Right-handed 310
Helix 39	AE3	E	405	410	Right-handed 310
Helix 40	AE4	E	416	422	Right-handed alpha
Helix 41	AE5	E	438	443	Right-handed alpha
Helix 42	AE6	H	28	32	Right-handed 310
Helix 43	AE7	H	74	76	Right-handed 310
Helix 44	AE8	H	87	91	Right-handed 310
Helix 45	AE9	L	30	33	Right-handed 310
Helix 46	AF1	L	80	84	Right-handed 310

There are 12 sheets in PDB entry 8S9G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	142	143	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	487	488	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	356	359	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	358	first strand
Strand 2	E	395	403	anti-parallel
Strand 3	E	507	515	anti-parallel
Strand 4	E	431	437	anti-parallel
Strand 5	E	376	380	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	452	454	first strand
Strand 2	E	492	494	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	473	474	first strand
Strand 2	E	488	489	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	121	124	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	121	124	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	114	117	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	29	anti-parallel
Strand 3	L	63	76	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	46	50	anti-parallel
Strand 3	L	35	39	anti-parallel
Strand 4	L	86	91	anti-parallel
Strand 5	L	97	98	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	46	50	anti-parallel
Strand 3	L	35	39	anti-parallel
Strand 4	L	86	91	anti-parallel
Strand 5	L	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S9G

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S9G