Analysis of interatomic Contacts of Structural Units in PDB entry:
8S9I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S9I entry

There are 3 chains in PDB entry 8S9I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4VAL 439
G
 ALA 248ASP 269
B
 T 600 T 604
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8S9I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 22Right-handed alpha
Helix 2
AA2
A
37 52Right-handed alpha
Helix 3
AA3
A
63 72Right-handed alpha
Helix 4
AA4
A
80 85Right-handed alpha
Helix 5
AA5
A
121 132Right-handed alpha
Helix 6
AA6
A
183 191Right-handed alpha
Helix 7
AA7
A
213 226Right-handed alpha
Helix 8
AA8
A
241 257Right-handed alpha
Helix 9
AA9
A
345 365Right-handed alpha
Helix 10
AB1
A
374 382Right-handed alpha
Helix 11
AB2
A
410 414Right-handed 310
Helix 12
AB3
A
417 430Right-handed alpha
Helix 13
AB4
G
250 264Right-handed alpha
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There are 5 sheets in PDB entry 8S9I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
111 115parallel
Strand 3
A
137 142parallel
Strand 4
A
28 31parallel
Strand 5
A
171 172parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
432 437parallel
Strand 3
A
403 408parallel
Strand 4
A
235 239parallel
Strand 5
A
392 394parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 342first strand
Strand 2
A
318 329anti-parallel
Strand 3
A
296 309anti-parallel
Strand 4
A
268 271anti-parallel
Strand 5
A
387 389anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
288 291anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 281first strand
Strand 2
A
284 285anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il