Analysis of interatomic Contacts of Structural Units in PDB entry:
8S9J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S9J entry

There are 3 chains in PDB entry 8S9J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO -1	GLN 450
B	PRO -1	GLN 450
C	PRO -1	ASN 325

There are143 helices in PDB entry 8S9J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	35	Right-handed 310
Helix 2	AA2	A	63	69	Right-handed alpha
Helix 3	AA3	A	115	119	Right-handed 310
Helix 4	AA4	A	120	127	Right-handed alpha
Helix 5	AA5	A	138	144	Right-handed alpha
Helix 6	AA6	A	145	149	Right-handed 310
Helix 7	AA7	A	156	173	Right-handed alpha
Helix 8	AA8	A	174	176	Right-handed 310
Helix 9	AA9	A	189	200	Right-handed alpha
Helix 10	AB1	A	204	208	Right-handed 310
Helix 11	AB2	A	222	242	Right-handed alpha
Helix 12	AB3	A	245	249	Right-handed 310
Helix 13	AB4	A	250	266	Right-handed alpha
Helix 14	AB5	A	300	305	Right-handed 310
Helix 15	AB6	A	308	312	Right-handed 310
Helix 16	AB7	A	314	325	Right-handed alpha
Helix 17	AB8	A	330	335	Right-handed 310
Helix 18	AB9	A	336	349	Right-handed alpha
Helix 19	AC1	A	349	364	Right-handed alpha
Helix 20	AC2	A	390	397	Right-handed alpha
Helix 21	AC3	A	400	405	Right-handed alpha
Helix 22	AC4	A	411	432	Right-handed alpha
Helix 23	AC5	B	31	35	Right-handed 310
Helix 24	AC6	B	115	119	Right-handed 310
Helix 25	AC7	B	120	127	Right-handed alpha
Helix 26	AC8	B	138	144	Right-handed alpha
Helix 27	AC9	B	145	149	Right-handed 310
Helix 28	AD1	B	156	173	Right-handed alpha
Helix 29	AD2	B	174	176	Right-handed 310
Helix 30	AD3	B	189	200	Right-handed alpha
Helix 31	AD4	B	204	208	Right-handed 310
Helix 32	AD5	B	222	242	Right-handed alpha
Helix 33	AD6	B	245	249	Right-handed 310
Helix 34	AD7	B	250	266	Right-handed alpha
Helix 35	AD8	B	300	305	Right-handed 310
Helix 36	AD9	B	314	325	Right-handed alpha
Helix 37	AE1	B	330	335	Right-handed 310
Helix 38	AE2	B	336	349	Right-handed alpha
Helix 39	AE3	B	349	364	Right-handed alpha
Helix 40	AE4	B	390	397	Right-handed alpha
Helix 41	AE5	B	400	405	Right-handed alpha
Helix 42	AE6	B	411	432	Right-handed alpha
Helix 43	AE7	C	31	35	Right-handed 310
Helix 44	AE8	C	64	69	Right-handed alpha
Helix 45	AE9	C	115	119	Right-handed 310
Helix 46	AF1	C	120	127	Right-handed alpha
Helix 47	AF2	C	138	144	Right-handed alpha
Helix 48	AF3	C	145	149	Right-handed 310
Helix 49	AF4	C	156	173	Right-handed alpha
Helix 50	AF5	C	174	176	Right-handed 310
Helix 51	AF6	C	189	199	Right-handed alpha
Helix 52	AF7	C	204	208	Right-handed 310
Helix 53	AF8	C	222	242	Right-handed alpha
Helix 54	AF9	C	245	249	Right-handed 310
Helix 55	AG1	C	250	266	Right-handed alpha
Helix 56	AG2	C	300	305	Right-handed 310
Helix 57	AG3	C	314	325	Right-handed alpha
Helix 58	AG4	C	330	334	Right-handed 310
Helix 59	AG5	C	336	348	Right-handed alpha
Helix 60	AG6	C	349	364	Right-handed alpha
Helix 61	AG7	C	390	397	Right-handed alpha
Helix 62	AG8	C	400	405	Right-handed alpha
Helix 63	AG9	C	411	432	Right-handed alpha
Helix 64	AH1	D	31	35	Right-handed 310
Helix 65	AH2	D	115	119	Right-handed 310
Helix 66	AH3	D	120	127	Right-handed alpha
Helix 67	AH4	D	138	144	Right-handed alpha
Helix 68	AH5	D	145	149	Right-handed 310
Helix 69	AH6	D	156	173	Right-handed alpha
Helix 70	AH7	D	174	176	Right-handed 310
Helix 71	AH8	D	189	199	Right-handed alpha
Helix 72	AH9	D	204	208	Right-handed 310
Helix 73	AI1	D	222	242	Right-handed alpha
Helix 74	AI2	D	245	249	Right-handed 310
Helix 75	AI3	D	250	266	Right-handed alpha
Helix 76	AI4	D	300	305	Right-handed 310
Helix 77	AI5	D	314	325	Right-handed alpha
Helix 78	AI6	D	330	335	Right-handed 310
Helix 79	AI7	D	336	349	Right-handed alpha
Helix 80	AI8	D	349	364	Right-handed alpha
Helix 81	AI9	D	391	397	Right-handed alpha
Helix 82	AJ1	D	400	405	Right-handed alpha
Helix 83	AJ2	D	411	432	Right-handed alpha
Helix 84	AJ3	E	31	35	Right-handed 310
Helix 85	AJ4	E	115	119	Right-handed 310
Helix 86	AJ5	E	120	127	Right-handed alpha
Helix 87	AJ6	E	138	144	Right-handed alpha
Helix 88	AJ7	E	156	173	Right-handed alpha
Helix 89	AJ8	E	174	176	Right-handed 310
Helix 90	AJ9	E	189	200	Right-handed alpha
Helix 91	AK1	E	204	208	Right-handed 310
Helix 92	AK2	E	222	240	Right-handed alpha
Helix 93	AK3	E	245	249	Right-handed 310
Helix 94	AK4	E	250	266	Right-handed alpha
Helix 95	AK5	E	300	305	Right-handed 310
Helix 96	AK6	E	314	325	Right-handed alpha
Helix 97	AK7	E	330	335	Right-handed 310
Helix 98	AK8	E	336	349	Right-handed alpha
Helix 99	AK9	E	349	364	Right-handed alpha
Helix 100	AL1	E	390	397	Right-handed alpha
Helix 101	AL2	E	400	405	Right-handed alpha
Helix 102	AL3	E	411	432	Right-handed alpha
Helix 103	AL4	F	31	35	Right-handed 310
Helix 104	AL5	F	64	69	Right-handed alpha
Helix 105	AL6	F	115	119	Right-handed 310
Helix 106	AL7	F	120	127	Right-handed alpha
Helix 107	AL8	F	139	144	Right-handed alpha
Helix 108	AL9	F	145	149	Right-handed 310
Helix 109	AM1	F	156	173	Right-handed alpha
Helix 110	AM2	F	174	176	Right-handed 310
Helix 111	AM3	F	189	200	Right-handed alpha
Helix 112	AM4	F	204	208	Right-handed 310
Helix 113	AM5	F	222	242	Right-handed alpha
Helix 114	AM6	F	245	249	Right-handed 310
Helix 115	AM7	F	250	266	Right-handed alpha
Helix 116	AM8	F	300	305	Right-handed 310
Helix 117	AM9	F	308	312	Right-handed 310
Helix 118	AN1	F	314	325	Right-handed alpha
Helix 119	AN2	F	330	335	Right-handed 310
Helix 120	AN3	F	336	349	Right-handed alpha
Helix 121	AN4	F	349	364	Right-handed alpha
Helix 122	AN5	F	391	397	Right-handed alpha
Helix 123	AN6	F	400	405	Right-handed alpha
Helix 124	AN7	F	411	432	Right-handed alpha
Helix 125	AN8	G	31	35	Right-handed 310
Helix 126	AN9	G	115	119	Right-handed 310
Helix 127	AO1	G	120	127	Right-handed alpha
Helix 128	AO2	G	138	144	Right-handed alpha
Helix 129	AO3	G	145	149	Right-handed 310
Helix 130	AO4	G	156	173	Right-handed alpha
Helix 131	AO5	G	174	176	Right-handed 310
Helix 132	AO6	G	189	199	Right-handed alpha
Helix 133	AO7	G	204	208	Right-handed 310
Helix 134	AO8	G	222	242	Right-handed alpha
Helix 135	AO9	G	250	266	Right-handed alpha
Helix 136	AP1	G	300	305	Right-handed 310
Helix 137	AP2	G	314	325	Right-handed alpha
Helix 138	AP3	G	330	334	Right-handed 310
Helix 139	AP4	G	336	349	Right-handed alpha
Helix 140	AP5	G	349	364	Right-handed alpha
Helix 141	AP6	G	390	397	Right-handed alpha
Helix 142	AP7	G	400	405	Right-handed alpha
Helix 143	AP8	G	411	432	Right-handed alpha

There are 14 sheets in PDB entry 8S9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	0	4	first strand
Strand 2	A	9	15	anti-parallel
Strand 3	A	49	50	parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	0	4	first strand
Strand 2	A	9	15	anti-parallel
Strand 3	A	18	25	anti-parallel
Strand 4	A	84	90	anti-parallel
Strand 5	A	130	134	anti-parallel
Strand 6	A	97	103	parallel
Strand 7	A	178	188	parallel
Strand 8	A	210	214	parallel
Strand 9	A	293	298	parallel
Strand 10	A	369	374	parallel
Strand 11	A	447	449	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	0	5	first strand
Strand 2	B	8	15	anti-parallel
Strand 3	B	49	50	parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	0	5	first strand
Strand 2	B	8	15	anti-parallel
Strand 3	B	18	25	anti-parallel
Strand 4	B	84	90	anti-parallel
Strand 5	B	130	134	anti-parallel
Strand 6	B	97	103	parallel
Strand 7	B	178	188	parallel
Strand 8	B	210	214	parallel
Strand 9	B	293	298	parallel
Strand 10	B	369	374	parallel
Strand 11	B	447	449	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	0	5	first strand
Strand 2	C	8	15	anti-parallel
Strand 3	C	49	50	parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	0	5	first strand
Strand 2	C	8	15	anti-parallel
Strand 3	C	18	25	anti-parallel
Strand 4	C	84	90	anti-parallel
Strand 5	C	130	134	anti-parallel
Strand 6	C	97	103	parallel
Strand 7	C	178	188	parallel
Strand 8	C	210	214	parallel
Strand 9	C	293	298	parallel
Strand 10	C	369	374	parallel
Strand 11	C	447	449	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1	5	first strand
Strand 2	D	8	15	anti-parallel
Strand 3	D	49	50	parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1	5	first strand
Strand 2	D	8	15	anti-parallel
Strand 3	D	18	25	anti-parallel
Strand 4	D	84	90	anti-parallel
Strand 5	D	130	134	anti-parallel
Strand 6	D	97	103	parallel
Strand 7	D	178	188	parallel
Strand 8	D	210	214	parallel
Strand 9	D	293	298	parallel
Strand 10	D	369	374	parallel
Strand 11	D	447	449	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	0	5	first strand
Strand 2	E	8	15	anti-parallel
Strand 3	E	49	50	parallel

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There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	0	5	first strand
Strand 2	E	8	15	anti-parallel
Strand 3	E	18	25	anti-parallel
Strand 4	E	84	90	anti-parallel
Strand 5	E	130	134	anti-parallel
Strand 6	E	97	103	parallel
Strand 7	E	178	188	parallel
Strand 8	E	210	214	parallel
Strand 9	E	293	298	parallel
Strand 10	E	369	374	parallel
Strand 11	E	447	449	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	0	5	first strand
Strand 2	F	8	15	anti-parallel
Strand 3	F	49	50	parallel

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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	0	5	first strand
Strand 2	F	8	15	anti-parallel
Strand 3	F	18	25	anti-parallel
Strand 4	F	84	90	anti-parallel
Strand 5	F	130	134	anti-parallel
Strand 6	F	97	103	parallel
Strand 7	F	178	188	parallel
Strand 8	F	210	214	parallel
Strand 9	F	293	298	parallel
Strand 10	F	369	374	parallel
Strand 11	F	447	449	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	0	5	first strand
Strand 2	G	8	15	anti-parallel
Strand 3	G	49	50	parallel

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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	0	5	first strand
Strand 2	G	8	15	anti-parallel
Strand 3	G	18	25	anti-parallel
Strand 4	G	84	90	anti-parallel
Strand 5	G	130	134	anti-parallel
Strand 6	G	97	103	parallel
Strand 7	G	178	188	parallel
Strand 8	G	210	214	parallel
Strand 9	G	293	298	parallel
Strand 10	G	369	374	parallel
Strand 11	G	447	449	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S9J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S9J