Analysis of interatomic Contacts of Structural Units in PDB entry:
8S9K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S9K entry

There are 4 chains in PDB entry 8S9K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 340	ASN 599
B	GLY 332	GLN 600
C	LYS 339	ASN 599
D	GLY 332	ASN 599

There are 42 helices in PDB entry 8S9K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	343	354	Right-handed alpha
Helix 2	AA2	A	383	392	Right-handed alpha
Helix 3	AA3	A	396	398	Right-handed 310
Helix 4	AA4	A	399	407	Right-handed alpha
Helix 5	AA5	A	416	420	Right-handed 310
Helix 6	AA6	A	474	478	Right-handed 310
Helix 7	AA7	A	489	503	Right-handed alpha
Helix 8	AA8	A	519	523	Right-handed 310
Helix 9	AA9	A	578	589	Right-handed alpha
Helix 10	AB1	A	589	598	Right-handed alpha
Helix 11	AB2	B	344	354	Right-handed alpha
Helix 12	AB3	B	383	392	Right-handed alpha
Helix 13	AB4	B	396	398	Right-handed 310
Helix 14	AB5	B	399	407	Right-handed alpha
Helix 15	AB6	B	416	420	Right-handed 310
Helix 16	AB7	B	474	478	Right-handed 310
Helix 17	AB8	B	489	491	Right-handed 310
Helix 18	AB9	B	492	506	Right-handed alpha
Helix 19	AC1	B	516	525	Right-handed alpha
Helix 20	AC2	B	578	589	Right-handed alpha
Helix 21	AC3	B	589	597	Right-handed alpha
Helix 22	AC4	C	344	354	Right-handed alpha
Helix 23	AC5	C	383	392	Right-handed alpha
Helix 24	AC6	C	396	408	Right-handed alpha
Helix 25	AC7	C	416	420	Right-handed 310
Helix 26	AC8	C	474	478	Right-handed 310
Helix 27	AC9	C	489	504	Right-handed alpha
Helix 28	AD1	C	516	519	Right-handed 310
Helix 29	AD2	C	520	525	Right-handed alpha
Helix 30	AD3	C	578	589	Right-handed alpha
Helix 31	AD4	C	589	597	Right-handed alpha
Helix 32	AD5	D	343	355	Right-handed alpha
Helix 33	AD6	D	383	392	Right-handed alpha
Helix 34	AD7	D	396	398	Right-handed 310
Helix 35	AD8	D	399	407	Right-handed alpha
Helix 36	AD9	D	416	420	Right-handed 310
Helix 37	AE1	D	474	478	Right-handed 310
Helix 38	AE2	D	489	491	Right-handed 310
Helix 39	AE3	D	492	506	Right-handed alpha
Helix 40	AE4	D	516	521	Right-handed alpha
Helix 41	AE5	D	578	589	Right-handed alpha
Helix 42	AE6	D	589	597	Right-handed alpha

There are 9 sheets in PDB entry 8S9K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	435	first strand
Strand 2	A	440	446	anti-parallel
Strand 3	A	425	427	anti-parallel
Strand 4	A	408	411	anti-parallel
Strand 5	A	357	363	anti-parallel
Strand 6	A	367	376	anti-parallel
Strand 7	A	379	382	anti-parallel
Strand 8	A	440	446	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	473	first strand
Strand 2	A	481	488	anti-parallel
Strand 3	A	529	533	anti-parallel
Strand 4	A	567	577	anti-parallel
Strand 5	A	552	564	anti-parallel
Strand 6	A	544	546	anti-parallel
Strand 7	A	468	473	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	343	first strand
Strand 2	C	481	488	anti-parallel
Strand 3	C	529	533	anti-parallel
Strand 4	C	567	577	anti-parallel
Strand 5	C	552	564	anti-parallel
Strand 6	C	544	547	anti-parallel
Strand 7	C	468	473	anti-parallel
Strand 8	C	481	488	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	435	first strand
Strand 2	B	440	446	anti-parallel
Strand 3	B	424	427	anti-parallel
Strand 4	B	408	411	anti-parallel
Strand 5	B	357	363	anti-parallel
Strand 6	B	367	376	anti-parallel
Strand 7	B	379	382	anti-parallel
Strand 8	B	440	446	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	513	first strand
Strand 2	B	552	563	anti-parallel
Strand 3	B	544	546	anti-parallel
Strand 4	B	468	473	anti-parallel
Strand 5	B	481	488	anti-parallel
Strand 6	C	342	343	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	513	first strand
Strand 2	B	552	563	anti-parallel
Strand 3	B	568	577	anti-parallel
Strand 4	B	529	533	anti-parallel
Strand 5	B	481	488	anti-parallel
Strand 6	C	342	343	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	434	435	first strand
Strand 2	C	440	446	anti-parallel
Strand 3	C	424	427	anti-parallel
Strand 4	C	409	411	anti-parallel
Strand 5	C	357	363	anti-parallel
Strand 6	C	367	376	anti-parallel
Strand 7	C	379	382	anti-parallel
Strand 8	C	440	446	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	434	435	first strand
Strand 2	D	440	446	anti-parallel
Strand 3	D	424	427	anti-parallel
Strand 4	D	408	411	anti-parallel
Strand 5	D	357	363	anti-parallel
Strand 6	D	367	376	anti-parallel
Strand 7	D	379	382	anti-parallel
Strand 8	D	440	446	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	512	513	first strand
Strand 2	D	552	564	anti-parallel
Strand 3	D	567	577	anti-parallel
Strand 4	D	529	533	anti-parallel
Strand 5	D	481	488	anti-parallel
Strand 6	D	468	473	anti-parallel
Strand 7	D	544	546	anti-parallel
Strand 8	D	552	564	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S9K

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S9K