Analysis of interatomic Contacts of Structural Units in PDB entry:
8S9L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S9L entry

There are 2 chains in PDB entry 8S9L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 343ASN 599
B
 MET 344GLN 600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8S9L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
343 355Right-handed alpha
Helix 2
AA2
A
383 392Right-handed alpha
Helix 3
AA3
A
396 398Right-handed 310
Helix 4
AA4
A
399 407Right-handed alpha
Helix 5
AA5
A
474 478Right-handed 310
Helix 6
AA6
A
489 491Right-handed 310
Helix 7
AA7
A
492 506Right-handed alpha
Helix 8
AA8
A
534 538Right-handed 310
Helix 9
AA9
A
578 589Right-handed alpha
Helix 10
AB1
A
589 597Right-handed alpha
Helix 11
AB2
B
345 354Right-handed alpha
Helix 12
AB3
B
383 392Right-handed alpha
Helix 13
AB4
B
396 398Right-handed 310
Helix 14
AB5
B
399 407Right-handed alpha
Helix 15
AB6
B
489 491Right-handed 310
Helix 16
AB7
B
492 503Right-handed alpha
Helix 17
AB8
B
517 521Right-handed 310
Helix 18
AB9
B
578 589Right-handed alpha
Helix 19
AC1
B
589 597Right-handed alpha
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There are 4 sheets in PDB entry 8S9L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 426first strand
Strand 2
A
408 411anti-parallel
Strand 3
A
357 363anti-parallel
Strand 4
A
367 376anti-parallel
Strand 5
A
379 382anti-parallel
Strand 6
A
440 444anti-parallel
Strand 7
A
434 435anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 473first strand
Strand 2
A
481 488anti-parallel
Strand 3
A
529 532anti-parallel
Strand 4
A
567 577anti-parallel
Strand 5
A
552 564anti-parallel
Strand 6
A
544 546anti-parallel
Strand 7
A
468 473anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 412first strand
Strand 2
B
357 363anti-parallel
Strand 3
B
367 376anti-parallel
Strand 4
B
379 382anti-parallel
Strand 5
B
440 444anti-parallel
Strand 6
B
434 435anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
468 473first strand
Strand 2
B
481 488anti-parallel
Strand 3
B
529 532anti-parallel
Strand 4
B
567 577anti-parallel
Strand 5
B
552 564anti-parallel
Strand 6
B
544 546anti-parallel
Strand 7
B
468 473anti-parallel
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