Analysis of interatomic Contacts of Structural Units in PDB entry:
8S9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8S9M entry

There is 1 chain in PDB entry 8S9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 79TRP 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8S9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
88 94Right-handed alpha
Helix 2
AA2
A
111 116Right-handed alpha
Helix 3
AA3
A
135 153Right-handed alpha
Helix 4
AA4
A
176 181Right-handed alpha
Helix 5
AA5
A
230 234Right-handed 310
Helix 6
AA6
A
235 239Right-handed 310
Helix 7
AA7
A
258 270Right-handed alpha
Helix 8
AA8
A
284 293Right-handed alpha
Helix 9
AA9
A
303 317Right-handed alpha
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There are 2 sheets in PDB entry 8S9M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
296 301parallel
Strand 3
A
275 278parallel
Strand 4
A
101 106parallel
Strand 5
A
154 164parallel
Strand 6
A
210 217anti-parallel
Strand 7
A
186 194anti-parallel
Strand 8
A
242 244parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
172 174anti-parallel
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