Analysis of interatomic Contacts of Structural Units in PDB entry:
8S9P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S9P entry

There are 3 chains in PDB entry 8S9P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1867	LYS 2059
B	GLU 439	PRO 1352
C	LYS 23	MET 119

There are 4 helices in PDB entry 8S9P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2029	2034	Right-handed 310
Helix 2	AA2	B	702	709	Right-handed 310
Helix 3	AA3	B	1004	1013	Right-handed 310
Helix 4	AA4	B	1315	1320	Right-handed 310

There are 26 sheets in PDB entry 8S9P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1871	1874	first strand
Strand 2	A	2037	2045	anti-parallel
Strand 3	A	1914	1921	anti-parallel
Strand 4	A	1976	1982	anti-parallel
Strand 5	A	1987	1991	anti-parallel
Strand 6	A	1997	1999	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1871	1874	first strand
Strand 2	A	2037	2045	anti-parallel
Strand 3	A	2048	2050	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1879	1882	first strand
Strand 2	A	2013	2016	anti-parallel
Strand 3	A	1927	1932	anti-parallel
Strand 4	A	1941	1947	anti-parallel
Strand 5	A	1950	1956	anti-parallel
Strand 6	A	1962	1965	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	453	first strand
Strand 2	B	441	445	anti-parallel
Strand 3	B	687	690	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	476	first strand
Strand 2	B	481	486	anti-parallel
Strand 3	B	491	496	anti-parallel
Strand 4	B	503	506	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	519	first strand
Strand 2	B	524	529	anti-parallel
Strand 3	B	534	538	anti-parallel
Strand 4	B	546	549	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	562	first strand
Strand 2	B	567	572	anti-parallel
Strand 3	B	578	583	anti-parallel
Strand 4	B	590	593	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	606	first strand
Strand 2	B	611	616	anti-parallel
Strand 3	B	621	625	anti-parallel
Strand 4	B	633	636	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	649	first strand
Strand 2	B	652	657	anti-parallel
Strand 3	B	663	666	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	716	first strand
Strand 2	B	719	723	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	764	766	first strand
Strand 2	B	752	756	anti-parallel
Strand 3	B	742	747	anti-parallel
Strand 4	B	991	996	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	775	781	first strand
Strand 2	B	786	791	anti-parallel
Strand 3	B	797	800	anti-parallel
Strand 4	B	808	811	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	821	824	first strand
Strand 2	B	829	832	anti-parallel
Strand 3	B	840	844	anti-parallel
Strand 4	B	851	854	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	861	867	first strand
Strand 2	B	872	877	anti-parallel
Strand 3	B	884	888	anti-parallel
Strand 4	B	895	898	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	905	911	first strand
Strand 2	B	916	921	anti-parallel
Strand 3	B	926	931	anti-parallel
Strand 4	B	938	941	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	952	954	first strand
Strand 2	B	957	962	anti-parallel
Strand 3	B	967	972	anti-parallel
Strand 4	B	980	983	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1071	1073	first strand
Strand 2	B	1059	1063	anti-parallel
Strand 3	B	1049	1055	anti-parallel
Strand 4	B	1296	1299	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1071	1073	first strand
Strand 2	B	1059	1063	anti-parallel
Strand 3	B	1049	1055	anti-parallel
Strand 4	B	1302	1303	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1086	1089	first strand
Strand 2	B	1094	1099	anti-parallel
Strand 3	B	1104	1109	anti-parallel
Strand 4	B	1116	1119	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1128	1131	first strand
Strand 2	B	1137	1142	anti-parallel
Strand 3	B	1147	1152	anti-parallel
Strand 4	B	1159	1162	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1173	1175	first strand
Strand 2	B	1180	1184	anti-parallel
Strand 3	B	1192	1195	anti-parallel
Strand 4	B	1202	1206	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1215	1219	first strand
Strand 2	B	1224	1229	anti-parallel
Strand 3	B	1234	1239	anti-parallel
Strand 4	B	1246	1249	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1259	1261	first strand
Strand 2	B	1264	1267	anti-parallel
Strand 3	B	1276	1279	anti-parallel
Strand 4	B	1287	1288	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1323	1327	first strand
Strand 2	B	1330	1334	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	109	117	parallel
Strand 3	C	95	102	anti-parallel
Strand 4	C	58	63	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	48	first strand
Strand 2	C	83	86	anti-parallel
Strand 3	C	75	78	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S9P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S9P