Analysis of interatomic Contacts of Structural Units in PDB entry:
8S9U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8S9U entry

There are 7 chains in PDB entry 8S9U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 781
B	LYS 9	LYS 193
C	PHE -1	ASN 552
D	ALA 2	GLN 519
E	SER 112	SER 795
F	A 1	A 37
G	U 20	G 52

There are 94 helices in PDB entry 8S9U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	60	Right-handed alpha
Helix 2	AA2	A	66	76	Right-handed alpha
Helix 3	AA3	A	104	112	Right-handed alpha
Helix 4	AA4	A	114	121	Right-handed alpha
Helix 5	AA5	A	167	184	Right-handed alpha
Helix 6	AA6	A	191	195	Right-handed 310
Helix 7	AA7	A	207	218	Right-handed alpha
Helix 8	AA8	A	219	221	Right-handed 310
Helix 9	AA9	A	276	279	Right-handed 310
Helix 10	AB1	A	280	289	Right-handed alpha
Helix 11	AB2	A	293	301	Right-handed alpha
Helix 12	AB3	A	395	399	Right-handed 310
Helix 13	AB4	A	421	431	Right-handed alpha
Helix 14	AB5	A	433	437	Right-handed 310
Helix 15	AB6	A	495	508	Right-handed alpha
Helix 16	AB7	A	562	573	Right-handed alpha
Helix 17	AB8	A	577	581	Right-handed 310
Helix 18	AB9	A	589	594	Right-handed alpha
Helix 19	AC1	A	624	649	Right-handed alpha
Helix 20	AC2	A	650	659	Right-handed alpha
Helix 21	AC3	A	670	682	Right-handed alpha
Helix 22	AC4	A	686	688	Right-handed 310
Helix 23	AC5	A	689	703	Right-handed alpha
Helix 24	AC6	A	703	711	Right-handed alpha
Helix 25	AC7	A	715	726	Right-handed alpha
Helix 26	AC8	A	726	735	Right-handed alpha
Helix 27	AC9	A	738	742	Right-handed 310
Helix 28	AD1	A	746	780	Right-handed alpha
Helix 29	AD2	B	21	29	Right-handed alpha
Helix 30	AD3	B	58	64	Right-handed alpha
Helix 31	AD4	C	10	17	Right-handed alpha
Helix 32	AD5	C	20	35	Right-handed alpha
Helix 33	AD6	C	36	48	Right-handed alpha
Helix 34	AD7	C	50	59	Right-handed alpha
Helix 35	AD8	C	60	66	Right-handed 310
Helix 36	AD9	C	98	117	Right-handed alpha
Helix 37	AE1	C	135	155	Right-handed alpha
Helix 38	AE2	C	193	212	Right-handed alpha
Helix 39	AE3	C	220	228	Right-handed alpha
Helix 40	AE4	C	243	255	Right-handed alpha
Helix 41	AE5	C	259	286	Right-handed alpha
Helix 42	AE6	C	287	289	Right-handed 310
Helix 43	AE7	C	318	337	Right-handed alpha
Helix 44	AE8	C	337	349	Right-handed alpha
Helix 45	AE9	C	367	383	Right-handed alpha
Helix 46	AF1	C	384	389	Right-handed alpha
Helix 47	AF2	C	417	424	Right-handed alpha
Helix 48	AF3	C	442	447	Right-handed alpha
Helix 49	AF4	C	451	458	Right-handed alpha
Helix 50	AF5	C	459	472	Right-handed alpha
Helix 51	AF6	C	482	494	Right-handed alpha
Helix 52	AF7	C	496	506	Right-handed alpha
Helix 53	AF8	C	513	518	Right-handed alpha
Helix 54	AF9	C	537	544	Right-handed alpha
Helix 55	AG1	C	545	547	Right-handed 310
Helix 56	AG2	D	47	63	Right-handed alpha
Helix 57	AG3	D	66	75	Right-handed alpha
Helix 58	AG4	D	148	161	Right-handed alpha
Helix 59	AG5	D	190	200	Right-handed alpha
Helix 60	AG6	D	206	214	Right-handed alpha
Helix 61	AG7	D	263	284	Right-handed alpha
Helix 62	AG8	D	291	297	Right-handed alpha
Helix 63	AG9	D	300	305	Right-handed alpha
Helix 64	AH1	D	339	348	Right-handed alpha
Helix 65	AH2	D	355	364	Right-handed alpha
Helix 66	AH3	D	369	375	Right-handed alpha
Helix 67	AH4	D	416	424	Right-handed alpha
Helix 68	AH5	D	427	429	Right-handed 310
Helix 69	AH6	D	430	447	Right-handed alpha
Helix 70	AH7	D	479	483	Right-handed 310
Helix 71	AH8	D	495	512	Right-handed alpha
Helix 72	AH9	E	130	134	Right-handed 310
Helix 73	AI1	E	167	171	Right-handed 310
Helix 74	AI2	E	193	210	Right-handed alpha
Helix 75	AI3	E	228	233	Right-handed 310
Helix 76	AI4	E	260	264	Right-handed 310
Helix 77	AI5	E	376	394	Right-handed alpha
Helix 78	AI6	E	394	400	Right-handed alpha
Helix 79	AI7	E	414	419	Right-handed alpha
Helix 80	AI8	E	461	466	Right-handed 310
Helix 81	AI9	E	475	479	Right-handed 310
Helix 82	AJ1	E	480	486	Right-handed alpha
Helix 83	AJ2	E	536	540	Right-handed alpha
Helix 84	AJ3	E	555	559	Right-handed 310
Helix 85	AJ4	E	590	594	Right-handed 310
Helix 86	AJ5	E	595	599	Right-handed 310
Helix 87	AJ6	E	641	652	Right-handed alpha
Helix 88	AJ7	E	665	669	Right-handed 310
Helix 89	AJ8	E	687	694	Right-handed alpha
Helix 90	AJ9	E	704	707	Right-handed 310
Helix 91	AK1	E	708	724	Right-handed alpha
Helix 92	AK2	E	732	744	Right-handed alpha
Helix 93	AK3	E	766	776	Right-handed alpha
Helix 94	AK4	E	783	787	Right-handed 310

There are 37 sheets in PDB entry 8S9U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	153	160	anti-parallel
Strand 3	A	102	103	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	153	160	anti-parallel
Strand 3	A	4	10	anti-parallel
Strand 4	A	199	203	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	130	first strand
Strand 2	A	137	148	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	412	420	anti-parallel
Strand 3	A	309	312	anti-parallel
Strand 4	A	315	316	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	412	420	anti-parallel
Strand 3	A	245	254	anti-parallel
Strand 4	A	454	459	anti-parallel
Strand 5	A	440	443	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	265	first strand
Strand 2	A	268	271	anti-parallel
Strand 3	A	401	407	parallel
Strand 4	A	379	385	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	319	first strand
Strand 2	A	360	361	anti-parallel
Strand 3	A	374	375	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	324	327	anti-parallel
Strand 3	A	353	355	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	513	first strand
Strand 2	A	551	558	anti-parallel
Strand 3	A	522	523	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	513	first strand
Strand 2	A	551	558	anti-parallel
Strand 3	A	474	479	anti-parallel
Strand 4	A	585	587	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	529	first strand
Strand 2	A	543	546	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	532	533	first strand
Strand 2	A	538	539	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	663	first strand
Strand 2	A	666	668	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	49	first strand
Strand 2	B	36	40	anti-parallel
Strand 3	B	72	76	anti-parallel
Strand 4	B	80	88	anti-parallel
Strand 5	B	91	98	anti-parallel
Strand 6	B	10	20	anti-parallel
Strand 7	B	108	113	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	123	first strand
Strand 2	B	162	173	anti-parallel
Strand 3	B	180	193	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	139	143	anti-parallel
Strand 3	B	147	151	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	88	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	0	8	anti-parallel
Strand 4	C	122	130	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	183	first strand
Strand 2	C	189	192	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	306	first strand
Strand 2	C	309	315	anti-parallel
Strand 3	C	234	242	anti-parallel
Strand 4	C	354	359	anti-parallel
Strand 5	C	404	407	parallel
Strand 6	C	438	439	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	432	first strand
Strand 2	C	533	535	parallel
Strand 3	C	528	530	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	92	95	anti-parallel
Strand 3	D	133	135	anti-parallel
Strand 4	D	7	17	anti-parallel
Strand 5	D	138	142	anti-parallel
Strand 6	D	87	89	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	92	95	anti-parallel
Strand 3	D	133	135	anti-parallel
Strand 4	D	7	17	anti-parallel
Strand 5	D	176	186	anti-parallel
Strand 6	D	203	205	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	110	first strand
Strand 2	D	117	127	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	172	first strand
Strand 2	D	327	330	parallel
Strand 3	D	411	415	anti-parallel
Strand 4	D	221	230	anti-parallel
Strand 5	D	463	473	anti-parallel
Strand 6	D	484	486	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	253	first strand
Strand 2	D	258	262	anti-parallel
Strand 3	D	332	338	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	313	first strand
Strand 2	D	318	320	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	383	first strand
Strand 2	D	397	402	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	750	751	first strand
Strand 2	E	113	115	parallel
Strand 3	E	790	791	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	121	first strand
Strand 2	E	570	572	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	501	508	first strand
Strand 2	E	630	640	anti-parallel
Strand 3	E	149	159	anti-parallel
Strand 4	E	672	686	anti-parallel
Strand 5	E	660	661	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	174	first strand
Strand 2	E	177	180	anti-parallel
Strand 3	E	619	621	parallel
Strand 4	E	524	526	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	224	226	first strand
Strand 2	E	455	457	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	371	374	first strand
Strand 2	E	244	247	anti-parallel
Strand 3	E	235	240	anti-parallel
Strand 4	E	431	439	anti-parallel
Strand 5	E	442	449	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	268	272	first strand
Strand 2	E	307	317	parallel
Strand 3	E	294	304	anti-parallel
Strand 4	E	336	349	anti-parallel
Strand 5	E	360	365	anti-parallel
Strand 6	E	268	272	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	487	489	first strand
Strand 2	E	496	498	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	514	516	first strand
Strand 2	E	623	625	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	541	542	first strand
Strand 2	E	566	567	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8S9U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8S9U