Analysis of interatomic Contacts of Structural Units in PDB entry:
8SA8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SA8 entry

There are 4 chains in PDB entry 8SA8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 5	VAL 395
B	HIS 5	VAL 395
C	HIS 5	VAL 395
D	HIS 5	MET 71

There are 64 helices in PDB entry 8SA8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	13	Right-handed alpha
Helix 2	AA2	A	16	21	Right-handed alpha
Helix 3	AA3	A	38	48	Right-handed alpha
Helix 4	AA4	A	61	76	Right-handed alpha
Helix 5	AA5	A	85	97	Right-handed alpha
Helix 6	AA6	A	111	121	Right-handed alpha
Helix 7	AA7	A	122	126	Right-handed 310
Helix 8	AA8	A	136	144	Right-handed 310
Helix 9	AA9	A	165	177	Right-handed alpha
Helix 10	AB1	A	195	199	Right-handed 310
Helix 11	AB2	A	226	240	Right-handed alpha
Helix 12	AB3	A	245	279	Right-handed alpha
Helix 13	AB4	A	296	304	Right-handed alpha
Helix 14	AB5	A	320	329	Right-handed alpha
Helix 15	AB6	A	351	357	Right-handed alpha
Helix 16	AB7	A	379	395	Right-handed alpha
Helix 17	AB8	B	6	13	Right-handed alpha
Helix 18	AB9	B	16	21	Right-handed alpha
Helix 19	AC1	B	38	48	Right-handed alpha
Helix 20	AC2	B	61	76	Right-handed alpha
Helix 21	AC3	B	85	96	Right-handed alpha
Helix 22	AC4	B	111	121	Right-handed alpha
Helix 23	AC5	B	122	126	Right-handed 310
Helix 24	AC6	B	136	144	Right-handed 310
Helix 25	AC7	B	165	177	Right-handed alpha
Helix 26	AC8	B	195	200	Right-handed 310
Helix 27	AC9	B	229	240	Right-handed alpha
Helix 28	AD1	B	245	279	Right-handed alpha
Helix 29	AD2	B	296	304	Right-handed alpha
Helix 30	AD3	B	320	329	Right-handed alpha
Helix 31	AD4	B	351	357	Right-handed alpha
Helix 32	AD5	B	379	395	Right-handed alpha
Helix 33	AD6	C	6	13	Right-handed alpha
Helix 34	AD7	C	16	21	Right-handed alpha
Helix 35	AD8	C	38	48	Right-handed alpha
Helix 36	AD9	C	61	76	Right-handed alpha
Helix 37	AE1	C	85	96	Right-handed alpha
Helix 38	AE2	C	111	121	Right-handed alpha
Helix 39	AE3	C	122	126	Right-handed 310
Helix 40	AE4	C	136	144	Right-handed 310
Helix 41	AE5	C	165	177	Right-handed alpha
Helix 42	AE6	C	195	199	Right-handed 310
Helix 43	AE7	C	226	240	Right-handed alpha
Helix 44	AE8	C	245	279	Right-handed alpha
Helix 45	AE9	C	296	304	Right-handed alpha
Helix 46	AF1	C	320	329	Right-handed alpha
Helix 47	AF2	C	351	357	Right-handed alpha
Helix 48	AF3	C	379	395	Right-handed alpha
Helix 49	AF4	D	6	13	Right-handed alpha
Helix 50	AF5	D	16	21	Right-handed alpha
Helix 51	AF6	D	38	48	Right-handed alpha
Helix 52	AF7	D	61	76	Right-handed alpha
Helix 53	AF8	D	85	96	Right-handed alpha
Helix 54	AF9	D	111	121	Right-handed alpha
Helix 55	AG1	D	122	126	Right-handed 310
Helix 56	AG2	D	136	144	Right-handed 310
Helix 57	AG3	D	165	177	Right-handed alpha
Helix 58	AG4	D	195	200	Right-handed 310
Helix 59	AG5	D	226	240	Right-handed alpha
Helix 60	AG6	D	245	279	Right-handed alpha
Helix 61	AG7	D	296	304	Right-handed alpha
Helix 62	AG8	D	320	329	Right-handed alpha
Helix 63	AG9	D	351	357	Right-handed alpha
Helix 64	AH1	D	379	395	Right-handed alpha

There are 8 sheets in PDB entry 8SA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	83	first strand
Strand 2	A	221	225	anti-parallel
Strand 3	A	203	207	anti-parallel
Strand 4	A	181	185	parallel
Strand 5	A	148	154	parallel
Strand 6	A	103	107	parallel
Strand 7	A	128	132	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	287	first strand
Strand 2	A	310	315	anti-parallel
Strand 3	A	370	374	anti-parallel
Strand 4	A	346	350	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	83	first strand
Strand 2	B	221	225	anti-parallel
Strand 3	B	203	207	anti-parallel
Strand 4	B	181	185	parallel
Strand 5	B	148	154	parallel
Strand 6	B	103	107	parallel
Strand 7	B	128	132	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	287	first strand
Strand 2	B	310	315	anti-parallel
Strand 3	B	370	374	anti-parallel
Strand 4	B	346	350	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	83	first strand
Strand 2	C	221	225	anti-parallel
Strand 3	C	203	207	anti-parallel
Strand 4	C	181	185	parallel
Strand 5	C	148	154	parallel
Strand 6	C	103	107	parallel
Strand 7	C	128	132	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	287	first strand
Strand 2	C	310	315	anti-parallel
Strand 3	C	370	374	anti-parallel
Strand 4	C	346	350	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	83	first strand
Strand 2	D	221	225	anti-parallel
Strand 3	D	203	207	anti-parallel
Strand 4	D	181	185	parallel
Strand 5	D	148	154	parallel
Strand 6	D	103	107	parallel
Strand 7	D	128	132	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	287	first strand
Strand 2	D	310	315	anti-parallel
Strand 3	D	370	374	anti-parallel
Strand 4	D	346	350	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SA8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SA8