Analysis of interatomic Contacts of Structural Units in PDB entry:
8SAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SAM entry

There are 2 chains in PDB entry 8SAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -29VAL 862
B
 ALA -29VAL 862
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 8SAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-29 -22Right-handed alpha
Helix 2
AA2
A
-21 -19Right-handed 310
Helix 3
AA3
A
4 11Right-handed 310
Helix 4
AA4
A
71 73Right-handed 310
Helix 5
AA5
A
74 87Right-handed alpha
Helix 6
AA6
A
88 90Right-handed 310
Helix 7
AA7
A
98 107Right-handed alpha
Helix 8
AA8
A
125 140Right-handed alpha
Helix 9
AA9
A
198 200Right-handed 310
Helix 10
AB1
A
201 212Right-handed alpha
Helix 11
AB2
A
271 286Right-handed alpha
Helix 12
AB3
A
317 325Right-handed alpha
Helix 13
AB4
A
334 358Right-handed alpha
Helix 14
AB5
A
366 368Right-handed 310
Helix 15
AB6
A
409 427Right-handed alpha
Helix 16
AB7
A
432 452Right-handed alpha
Helix 17
AB8
A
452 472Right-handed alpha
Helix 18
AB9
A
482 486Right-handed 310
Helix 19
AC1
A
491 505Right-handed alpha
Helix 20
AC2
A
518 523Right-handed alpha
Helix 21
AC3
A
533 544Right-handed alpha
Helix 22
AC4
A
547 558Right-handed alpha
Helix 23
AC5
A
558 563Right-handed alpha
Helix 24
AC6
A
564 566Right-handed 310
Helix 25
AC7
A
574 585Right-handed alpha
Helix 26
AC8
A
587 599Right-handed alpha
Helix 27
AC9
A
612 627Right-handed alpha
Helix 28
AD1
A
629 650Right-handed alpha
Helix 29
AD2
A
668 684Right-handed alpha
Helix 30
AD3
A
685 701Right-handed alpha
Helix 31
AD4
A
728 744Right-handed alpha
Helix 32
AD5
A
748 757Right-handed alpha
Helix 33
AD6
A
758 761Right-handed 310
Helix 34
AD7
A
772 783Right-handed 310
Helix 35
AD8
A
785 801Right-handed alpha
Helix 36
AD9
A
815 819Right-handed 310
Helix 37
AE1
A
828 842Right-handed alpha
Helix 38
AE2
A
852 854Right-handed 310
Helix 39
AE3
A
855 861Right-handed alpha
Helix 40
AE4
B
-28 -22Right-handed alpha
Helix 41
AE5
B
-21 -19Right-handed 310
Helix 42
AE6
B
3 11Right-handed 310
Helix 43
AE7
B
71 73Right-handed 310
Helix 44
AE8
B
74 88Right-handed alpha
Helix 45
AE9
B
98 106Right-handed alpha
Helix 46
AF1
B
125 140Right-handed alpha
Helix 47
AF2
B
198 200Right-handed 310
Helix 48
AF3
B
201 212Right-handed alpha
Helix 49
AF4
B
271 286Right-handed alpha
Helix 50
AF5
B
317 325Right-handed alpha
Helix 51
AF6
B
334 358Right-handed alpha
Helix 52
AF7
B
366 368Right-handed 310
Helix 53
AF8
B
409 427Right-handed alpha
Helix 54
AF9
B
432 452Right-handed alpha
Helix 55
AG1
B
452 472Right-handed alpha
Helix 56
AG2
B
482 486Right-handed 310
Helix 57
AG3
B
491 505Right-handed alpha
Helix 58
AG4
B
518 523Right-handed alpha
Helix 59
AG5
B
533 544Right-handed alpha
Helix 60
AG6
B
547 558Right-handed alpha
Helix 61
AG7
B
558 563Right-handed alpha
Helix 62
AG8
B
564 566Right-handed 310
Helix 63
AG9
B
574 585Right-handed alpha
Helix 64
AH1
B
587 599Right-handed alpha
Helix 65
AH2
B
612 627Right-handed alpha
Helix 66
AH3
B
629 650Right-handed alpha
Helix 67
AH4
B
668 683Right-handed alpha
Helix 68
AH5
B
685 701Right-handed alpha
Helix 69
AH6
B
728 744Right-handed alpha
Helix 70
AH7
B
748 757Right-handed alpha
Helix 71
AH8
B
758 761Right-handed 310
Helix 72
AH9
B
772 783Right-handed 310
Helix 73
AI1
B
785 801Right-handed alpha
Helix 74
AI2
B
815 819Right-handed 310
Helix 75
AI3
B
828 842Right-handed alpha
Helix 76
AI4
B
852 854Right-handed 310
Helix 77
AI5
B
855 861Right-handed alpha
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There are 13 sheets in PDB entry 8SAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
92 96anti-parallel
Strand 4
A
119 122anti-parallel
Strand 5
A
62 68anti-parallel
Strand 6
A
160 166anti-parallel
Strand 7
A
153 154anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
187 188anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 237first strand
Strand 2
A
240 247anti-parallel
Strand 3
A
252 259anti-parallel
Strand 4
A
304 310anti-parallel
Strand 5
A
295 301anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
370 372anti-parallel
Strand 3
A
378 380anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
387 388anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
703 705first strand
Strand 2
A
712 715anti-parallel
Strand 3
A
721 722anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
805 807first strand
Strand 2
A
810 812anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 43first strand
Strand 2
B
49 54anti-parallel
Strand 3
B
92 96anti-parallel
Strand 4
B
119 122anti-parallel
Strand 5
B
62 68anti-parallel
Strand 6
B
160 166anti-parallel
Strand 7
B
153 154anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 237first strand
Strand 2
B
240 247anti-parallel
Strand 3
B
252 259anti-parallel
Strand 4
B
304 310anti-parallel
Strand 5
B
295 301anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
370 372anti-parallel
Strand 3
B
378 380anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 361first strand
Strand 2
B
387 388anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
703 705first strand
Strand 2
B
712 715anti-parallel
Strand 3
B
721 722anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
805 807first strand
Strand 2
B
810 812anti-parallel
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