Analysis of interatomic Contacts of Structural Units in PDB entry:
8SAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SAP entry

There are 2 chains in PDB entry 8SAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4LYS 863
B
 MET 1LYS 863
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 8SAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 11Right-handed 310
Helix 2
AA2
A
75 89Right-handed alpha
Helix 3
AA3
A
98 107Right-handed alpha
Helix 4
AA4
A
111 115Right-handed 310
Helix 5
AA5
A
126 137Right-handed alpha
Helix 6
AA6
A
204 212Right-handed alpha
Helix 7
AA7
A
224 226Right-handed 310
Helix 8
AA8
A
271 286Right-handed alpha
Helix 9
AA9
A
317 325Right-handed alpha
Helix 10
AB1
A
334 358Right-handed alpha
Helix 11
AB2
A
409 427Right-handed alpha
Helix 12
AB3
A
432 451Right-handed alpha
Helix 13
AB4
A
452 470Right-handed alpha
Helix 14
AB5
A
482 486Right-handed 310
Helix 15
AB6
A
491 505Right-handed alpha
Helix 16
AB7
A
518 523Right-handed alpha
Helix 17
AB8
A
533 544Right-handed alpha
Helix 18
AB9
A
547 558Right-handed alpha
Helix 19
AC1
A
562 566Right-handed 310
Helix 20
AC2
A
574 585Right-handed alpha
Helix 21
AC3
A
587 599Right-handed alpha
Helix 22
AC4
A
612 628Right-handed alpha
Helix 23
AC5
A
629 650Right-handed alpha
Helix 24
AC6
A
668 682Right-handed alpha
Helix 25
AC7
A
685 701Right-handed alpha
Helix 26
AC8
A
728 744Right-handed alpha
Helix 27
AC9
A
748 757Right-handed alpha
Helix 28
AD1
A
758 761Right-handed 310
Helix 29
AD2
A
772 783Right-handed 310
Helix 30
AD3
A
785 801Right-handed alpha
Helix 31
AD4
A
815 819Right-handed 310
Helix 32
AD5
A
828 842Right-handed alpha
Helix 33
AD6
A
855 861Right-handed alpha
Helix 34
AD7
B
3 11Right-handed 310
Helix 35
AD8
B
74 90Right-handed alpha
Helix 36
AD9
B
98 107Right-handed alpha
Helix 37
AE1
B
125 140Right-handed alpha
Helix 38
AE2
B
202 209Right-handed alpha
Helix 39
AE3
B
224 226Right-handed 310
Helix 40
AE4
B
271 286Right-handed alpha
Helix 41
AE5
B
317 325Right-handed alpha
Helix 42
AE6
B
334 358Right-handed alpha
Helix 43
AE7
B
409 427Right-handed alpha
Helix 44
AE8
B
432 452Right-handed alpha
Helix 45
AE9
B
452 472Right-handed alpha
Helix 46
AF1
B
482 486Right-handed 310
Helix 47
AF2
B
491 505Right-handed alpha
Helix 48
AF3
B
518 523Right-handed alpha
Helix 49
AF4
B
533 544Right-handed alpha
Helix 50
AF5
B
547 558Right-handed alpha
Helix 51
AF6
B
562 566Right-handed 310
Helix 52
AF7
B
574 585Right-handed alpha
Helix 53
AF8
B
587 599Right-handed alpha
Helix 54
AF9
B
612 627Right-handed alpha
Helix 55
AG1
B
629 650Right-handed alpha
Helix 56
AG2
B
668 682Right-handed alpha
Helix 57
AG3
B
685 701Right-handed alpha
Helix 58
AG4
B
728 744Right-handed alpha
Helix 59
AG5
B
748 757Right-handed alpha
Helix 60
AG6
B
758 761Right-handed 310
Helix 61
AG7
B
772 783Right-handed 310
Helix 62
AG8
B
785 801Right-handed alpha
Helix 63
AG9
B
815 819Right-handed 310
Helix 64
AH1
B
828 842Right-handed alpha
Helix 65
AH2
B
852 854Right-handed 310
Helix 66
AH3
B
855 861Right-handed alpha
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There are 12 sheets in PDB entry 8SAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
92 96anti-parallel
Strand 4
A
119 122anti-parallel
Strand 5
A
62 68anti-parallel
Strand 6
A
160 166anti-parallel
Strand 7
A
153 154anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 236first strand
Strand 2
A
241 247anti-parallel
Strand 3
A
253 259anti-parallel
Strand 4
A
305 310anti-parallel
Strand 5
A
295 300anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
370 372anti-parallel
Strand 3
A
378 380anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
387 388anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
703 705first strand
Strand 2
A
712 715anti-parallel
Strand 3
A
721 722anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
805 807first strand
Strand 2
A
810 812anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 42first strand
Strand 2
B
49 54anti-parallel
Strand 3
B
92 96anti-parallel
Strand 4
B
119 122anti-parallel
Strand 5
B
62 68anti-parallel
Strand 6
B
160 166anti-parallel
Strand 7
B
153 154anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 237first strand
Strand 2
B
240 247anti-parallel
Strand 3
B
253 259anti-parallel
Strand 4
B
305 310anti-parallel
Strand 5
B
295 300anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
370 372anti-parallel
Strand 3
B
378 380anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 361first strand
Strand 2
B
387 388anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
703 705first strand
Strand 2
B
712 715anti-parallel
Strand 3
B
721 722anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
805 807first strand
Strand 2
B
810 812anti-parallel
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