Analysis of interatomic Contacts of Structural Units in PDB entry:
8SAW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SAW entry

There are 12 chains in PDB entry 8SAW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 32	VAL 505
B	GLY 521	ASP 664
C	GLN 1	SER 126
D	GLN 1	LEU 110
E	GLU 32	VAL 505
F	GLY 521	ASP 664
H	GLN 1	SER 126
I	GLN 32	LEU 149
K	GLU 1	VAL 462
L	GLY 10	ASP 132
M	GLN 1	SER 126
N	GLN 1	LEU 110

There are 39 helices in PDB entry 8SAW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	116	Right-handed alpha
Helix 2	AA2	A	335	350	Right-handed alpha
Helix 3	AA3	A	368	373	Right-handed alpha
Helix 4	AA4	A	475	481	Right-handed alpha
Helix 5	AA5	B	529	534	Right-handed alpha
Helix 6	AA6	B	536	542	Right-handed 310
Helix 7	AA7	B	572	595	Right-handed alpha
Helix 8	AA8	B	618	622	Right-handed 310
Helix 9	AA9	B	627	636	Right-handed alpha
Helix 10	AB1	B	638	664	Right-handed alpha
Helix 11	AB2	C	28	30	Right-handed 310
Helix 12	AB3	C	87	91	Right-handed 310
Helix 13	AB4	D	81	85	Right-handed 310
Helix 14	AB5	E	98	116	Right-handed alpha
Helix 15	AB6	E	335	350	Right-handed alpha
Helix 16	AB7	E	368	373	Right-handed alpha
Helix 17	AB8	E	475	481	Right-handed alpha
Helix 18	AB9	F	529	534	Right-handed alpha
Helix 19	AC1	F	536	542	Right-handed 310
Helix 20	AC2	F	572	595	Right-handed alpha
Helix 21	AC3	F	618	622	Right-handed 310
Helix 22	AC4	F	627	636	Right-handed alpha
Helix 23	AC5	F	638	664	Right-handed alpha
Helix 24	AC6	H	28	30	Right-handed 310
Helix 25	AC7	H	87	91	Right-handed 310
Helix 26	AC8	I	112	116	Right-handed 310
Helix 27	AC9	K	67	85	Right-handed alpha
Helix 28	AD1	K	295	310	Right-handed alpha
Helix 29	AD2	K	327	332	Right-handed alpha
Helix 30	AD3	K	432	438	Right-handed alpha
Helix 31	AD4	L	18	23	Right-handed alpha
Helix 32	AD5	L	25	31	Right-handed 310
Helix 33	AD6	L	40	63	Right-handed alpha
Helix 34	AD7	L	86	90	Right-handed 310
Helix 35	AD8	L	95	104	Right-handed alpha
Helix 36	AD9	L	106	132	Right-handed alpha
Helix 37	AE1	M	28	30	Right-handed 310
Helix 38	AE2	M	87	91	Right-handed 310
Helix 39	AE3	N	81	85	Right-handed 310

There are 48 sheets in PDB entry 8SAW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	499	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	86	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	208	209	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	238	239	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	177	first strand
Strand 2	A	154	162	anti-parallel
Strand 3	A	129	132	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	434	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	443	455	anti-parallel
Strand 3	A	284	298	anti-parallel
Strand 4	A	330	334	anti-parallel
Strand 5	A	413	421	anti-parallel
Strand 6	A	381	385	anti-parallel
Strand 7	A	374	378	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	298	anti-parallel
Strand 3	A	443	455	anti-parallel
Strand 4	A	467	470	anti-parallel
Strand 5	A	359	361	parallel
Strand 6	A	393	396	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	304	first strand
Strand 2	A	320	323	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	316	317	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	121	124	parallel
Strand 3	C	92	101	anti-parallel
Strand 4	C	32	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	87	95	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	47	50	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	87	95	anti-parallel
Strand 4	D	98	100	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	72	77	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	495	499	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	F	603	609	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	84	86	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	53	56	parallel
Strand 3	E	216	218	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	67	first strand
Strand 2	E	208	209	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	92	first strand
Strand 2	E	238	239	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	177	first strand
Strand 2	E	154	162	anti-parallel
Strand 3	E	129	132	anti-parallel
Strand 4	E	190	193	anti-parallel
Strand 5	E	181	183	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	203	first strand
Strand 2	E	434	435	parallel
Strand 3	E	423	424	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	443	455	anti-parallel
Strand 3	E	284	298	anti-parallel
Strand 4	E	330	334	anti-parallel
Strand 5	E	413	421	anti-parallel
Strand 6	E	381	385	anti-parallel
Strand 7	E	374	378	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	298	anti-parallel
Strand 3	E	443	455	anti-parallel
Strand 4	E	467	470	anti-parallel
Strand 5	E	359	361	parallel
Strand 6	E	393	396	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	302	304	first strand
Strand 2	E	320	323	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	307	308	first strand
Strand 2	E	316	317	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	11	first strand
Strand 2	H	121	124	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	41	43	first strand
Strand 2	I	139	143	parallel
Strand 3	I	118	126	anti-parallel
Strand 4	I	66	71	anti-parallel
Strand 5	I	78	81	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	41	43	first strand
Strand 2	I	139	143	parallel
Strand 3	I	118	126	anti-parallel
Strand 4	I	129	131	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	49	54	first strand
Strand 2	I	103	108	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	452	456	first strand
Strand 2	K	4	8	anti-parallel
Strand 3	L	71	77	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	14	16	first strand
Strand 2	K	443	448	anti-parallel
Strand 3	K	184	189	anti-parallel
Strand 4	K	203	206	anti-parallel
Strand 5	K	53	55	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	44	45	first strand
Strand 2	K	22	25	parallel
Strand 3	K	177	179	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	36	first strand
Strand 2	K	169	170	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	60	61	first strand
Strand 2	K	199	200	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	128	136	first strand
Strand 2	K	113	121	anti-parallel
Strand 3	K	98	101	anti-parallel
Strand 4	K	151	154	anti-parallel
Strand 5	K	140	142	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	163	164	first strand
Strand 2	K	391	392	parallel
Strand 3	K	380	381	anti-parallel

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There are 7 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	220	222	first strand
Strand 2	K	400	412	anti-parallel
Strand 3	K	245	259	anti-parallel
Strand 4	K	290	294	anti-parallel
Strand 5	K	370	378	anti-parallel
Strand 6	K	340	344	anti-parallel
Strand 7	K	333	337	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	232	234	first strand
Strand 2	K	245	259	anti-parallel
Strand 3	K	400	412	anti-parallel
Strand 4	K	424	427	anti-parallel
Strand 5	K	318	320	parallel
Strand 6	K	352	354	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	263	265	first strand
Strand 2	K	279	282	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	268	269	first strand
Strand 2	K	275	276	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	5	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	78	83	anti-parallel
Strand 4	M	68	73	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	11	first strand
Strand 2	M	121	124	parallel
Strand 3	M	92	101	anti-parallel
Strand 4	M	32	39	anti-parallel
Strand 5	M	45	51	anti-parallel
Strand 6	M	58	60	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	105	109	parallel
Strand 3	N	87	95	anti-parallel
Strand 4	N	35	40	anti-parallel
Strand 5	N	47	50	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	105	109	parallel
Strand 3	N	87	95	anti-parallel
Strand 4	N	98	100	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	18	23	first strand
Strand 2	N	72	77	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SAW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SAW