Analysis of interatomic Contacts of Structural Units in PDB entry:
8SB0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SB0 entry

There are 12 chains in PDB entry 8SB0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 32	ARG 503
B	PHE 522	LEU 660
C	GLN 1	SER 126
D	GLN 231	LEU 340
F	GLU 32	VAL 505
G	PHE 522	LEU 660
H	GLN 1	SER 126
I	GLN 231	LEU 340
K	GLU 32	VAL 505
L	PHE 522	LEU 660
M	GLN 1	SER 126
N	GLN 231	LEU 340

There are 51 helices in PDB entry 8SB0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	68	74	Right-handed alpha
Helix 2	AA2	A	98	117	Right-handed alpha
Helix 3	AA3	A	123	127	Right-handed 310
Helix 4	AA4	A	177	179	Right-handed 310
Helix 5	AA5	A	335	353	Right-handed alpha
Helix 6	AA6	A	476	481	Right-handed alpha
Helix 7	AA7	B	529	535	Right-handed alpha
Helix 8	AA8	B	537	543	Right-handed alpha
Helix 9	AA9	B	571	576	Right-handed alpha
Helix 10	AB1	B	576	596	Right-handed alpha
Helix 11	AB2	B	611	615	Right-handed 310
Helix 12	AB3	B	618	622	Right-handed 310
Helix 13	AB4	B	627	636	Right-handed alpha
Helix 14	AB5	B	638	659	Right-handed alpha
Helix 15	AB6	C	62	65	Right-handed 310
Helix 16	AB7	C	87	91	Right-handed 310
Helix 17	AB8	D	311	315	Right-handed 310
Helix 18	AB9	F	68	74	Right-handed alpha
Helix 19	AC1	F	98	115	Right-handed alpha
Helix 20	AC2	F	123	127	Right-handed 310
Helix 21	AC3	F	177	179	Right-handed 310
Helix 22	AC4	F	335	353	Right-handed alpha
Helix 23	AC5	F	476	481	Right-handed alpha
Helix 24	AC6	F	482	484	Right-handed 310
Helix 25	AC7	G	529	535	Right-handed alpha
Helix 26	AC8	G	536	543	Right-handed alpha
Helix 27	AC9	G	571	576	Right-handed alpha
Helix 28	AD1	G	576	596	Right-handed alpha
Helix 29	AD2	G	611	615	Right-handed 310
Helix 30	AD3	G	618	622	Right-handed 310
Helix 31	AD4	G	627	636	Right-handed alpha
Helix 32	AD5	G	638	659	Right-handed alpha
Helix 33	AD6	H	28	30	Right-handed 310
Helix 34	AD7	H	87	91	Right-handed 310
Helix 35	AD8	I	311	315	Right-handed 310
Helix 36	AD9	K	68	74	Right-handed alpha
Helix 37	AE1	K	99	115	Right-handed alpha
Helix 38	AE2	K	123	127	Right-handed 310
Helix 39	AE3	K	177	179	Right-handed 310
Helix 40	AE4	K	335	353	Right-handed alpha
Helix 41	AE5	K	476	481	Right-handed alpha
Helix 42	AE6	L	529	535	Right-handed alpha
Helix 43	AE7	L	537	543	Right-handed alpha
Helix 44	AE8	L	571	576	Right-handed alpha
Helix 45	AE9	L	576	596	Right-handed alpha
Helix 46	AF1	L	611	615	Right-handed 310
Helix 47	AF2	L	618	622	Right-handed 310
Helix 48	AF3	L	627	636	Right-handed alpha
Helix 49	AF4	L	638	659	Right-handed alpha
Helix 50	AF5	M	87	91	Right-handed 310
Helix 51	AF6	N	311	315	Right-handed 310

There are 45 sheets in PDB entry 8SB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	497	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	604	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	75	76	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	157	159	anti-parallel
Strand 3	A	129	131	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	218	first strand
Strand 2	A	247	251	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	443	456	anti-parallel
Strand 3	A	284	298	anti-parallel
Strand 4	A	330	334	anti-parallel
Strand 5	A	413	420	anti-parallel
Strand 6	A	381	385	anti-parallel
Strand 7	A	374	378	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	298	anti-parallel
Strand 3	A	443	456	anti-parallel
Strand 4	A	465	469	anti-parallel
Strand 5	A	358	361	parallel
Strand 6	A	394	395	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	308	first strand
Strand 2	A	316	322	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	434	435	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	92	101	anti-parallel
Strand 4	C	32	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	59	60	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	241	first strand
Strand 2	D	335	338	parallel
Strand 3	D	317	323	anti-parallel
Strand 4	D	265	270	anti-parallel
Strand 5	D	277	280	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	241	first strand
Strand 2	D	335	338	parallel
Strand 3	D	317	323	anti-parallel
Strand 4	D	329	331	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	253	first strand
Strand 2	D	302	308	anti-parallel
Strand 3	D	295	299	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	494	497	first strand
Strand 2	F	35	40	anti-parallel
Strand 3	G	604	609	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	56	first strand
Strand 2	F	75	76	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	86	first strand
Strand 2	F	242	245	anti-parallel
Strand 3	F	223	228	anti-parallel
Strand 4	F	486	490	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	236	239	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	174	first strand
Strand 2	F	157	162	anti-parallel
Strand 3	F	129	131	anti-parallel
Strand 4	F	190	193	anti-parallel
Strand 5	F	181	183	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	218	first strand
Strand 2	F	247	251	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	261	first strand
Strand 2	F	443	456	anti-parallel
Strand 3	F	284	298	anti-parallel
Strand 4	F	330	334	anti-parallel
Strand 5	F	413	420	anti-parallel
Strand 6	F	381	385	anti-parallel
Strand 7	F	374	378	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	273	first strand
Strand 2	F	284	298	anti-parallel
Strand 3	F	443	456	anti-parallel
Strand 4	F	465	469	anti-parallel
Strand 5	F	358	361	parallel
Strand 6	F	394	395	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	302	308	first strand
Strand 2	F	316	322	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	423	424	first strand
Strand 2	F	434	435	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	121	125	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	59	60	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	239	241	first strand
Strand 2	I	335	338	parallel
Strand 3	I	317	323	anti-parallel
Strand 4	I	265	270	anti-parallel
Strand 5	I	277	280	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	239	241	first strand
Strand 2	I	335	338	parallel
Strand 3	I	317	323	anti-parallel
Strand 4	I	329	331	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	247	253	first strand
Strand 2	I	302	308	anti-parallel
Strand 3	I	295	299	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	494	497	first strand
Strand 2	K	35	40	anti-parallel
Strand 3	L	604	609	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	55	56	first strand
Strand 2	K	75	76	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	84	86	first strand
Strand 2	K	242	245	anti-parallel
Strand 3	K	223	228	anti-parallel
Strand 4	K	486	490	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	91	94	first strand
Strand 2	K	236	239	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	172	174	first strand
Strand 2	K	157	159	anti-parallel
Strand 3	K	129	131	anti-parallel
Strand 4	K	190	193	anti-parallel
Strand 5	K	181	183	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	215	218	first strand
Strand 2	K	247	251	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	259	261	first strand
Strand 2	K	443	456	anti-parallel
Strand 3	K	284	298	anti-parallel
Strand 4	K	329	334	anti-parallel
Strand 5	K	413	420	anti-parallel
Strand 6	K	381	385	anti-parallel
Strand 7	K	374	378	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	271	273	first strand
Strand 2	K	284	298	anti-parallel
Strand 3	K	443	456	anti-parallel
Strand 4	K	465	469	anti-parallel
Strand 5	K	358	361	parallel
Strand 6	K	394	395	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	302	308	first strand
Strand 2	K	316	322	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	423	424	first strand
Strand 2	K	434	435	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	6	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	78	83	anti-parallel
Strand 4	M	68	73	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	12	first strand
Strand 2	M	121	125	parallel
Strand 3	M	92	101	anti-parallel
Strand 4	M	32	39	anti-parallel
Strand 5	M	45	51	anti-parallel
Strand 6	M	59	60	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	239	241	first strand
Strand 2	N	335	338	parallel
Strand 3	N	317	323	anti-parallel
Strand 4	N	265	270	anti-parallel
Strand 5	N	277	280	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	239	241	first strand
Strand 2	N	335	338	parallel
Strand 3	N	317	323	anti-parallel
Strand 4	N	329	331	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	247	253	first strand
Strand 2	N	302	308	anti-parallel
Strand 3	N	295	299	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SB0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SB0