Analysis of interatomic Contacts of Structural Units in PDB entry:
8SB2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SB2 entry

There are 12 chains in PDB entry 8SB2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 34	ARG 503
B	ALA 512	ASP 664
C	GLN 1	SER 126
D	GLN 1	LEU 110
F	LEU 34	ARG 503
G	ALA 512	ASP 664
H	GLN 1	SER 126
I	GLN 1	LEU 110
K	LEU 34	ARG 503
L	ALA 512	ASP 664
M	GLN 1	SER 126
N	GLN 1	LEU 110

There are 43 helices in PDB entry 8SB2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	63	Right-handed 310
Helix 2	AA2	A	68	74	Right-handed alpha
Helix 3	AA3	A	99	115	Right-handed alpha
Helix 4	AA4	A	335	351	Right-handed alpha
Helix 5	AA5	A	368	373	Right-handed alpha
Helix 6	AA6	A	475	481	Right-handed alpha
Helix 7	AA7	B	536	543	Right-handed alpha
Helix 8	AA8	B	571	596	Right-handed alpha
Helix 9	AA9	B	611	615	Right-handed 310
Helix 10	AB1	B	619	624	Right-handed alpha
Helix 11	AB2	B	627	636	Right-handed alpha
Helix 12	AB3	B	638	644	Right-handed alpha
Helix 13	AB4	B	649	663	Right-handed alpha
Helix 14	AB5	D	81	85	Right-handed 310
Helix 15	AB6	F	57	63	Right-handed 310
Helix 16	AB7	F	68	74	Right-handed alpha
Helix 17	AB8	F	99	116	Right-handed alpha
Helix 18	AB9	F	335	351	Right-handed alpha
Helix 19	AC1	F	368	373	Right-handed alpha
Helix 20	AC2	F	475	481	Right-handed alpha
Helix 21	AC3	G	536	543	Right-handed alpha
Helix 22	AC4	G	571	596	Right-handed alpha
Helix 23	AC5	G	611	615	Right-handed 310
Helix 24	AC6	G	619	624	Right-handed alpha
Helix 25	AC7	G	627	636	Right-handed alpha
Helix 26	AC8	G	638	646	Right-handed alpha
Helix 27	AC9	G	650	654	Right-handed 310
Helix 28	AD1	G	655	662	Right-handed alpha
Helix 29	AD2	I	81	85	Right-handed 310
Helix 30	AD3	K	57	63	Right-handed 310
Helix 31	AD4	K	68	74	Right-handed alpha
Helix 32	AD5	K	99	115	Right-handed alpha
Helix 33	AD6	K	335	351	Right-handed alpha
Helix 34	AD7	K	368	373	Right-handed alpha
Helix 35	AD8	K	475	481	Right-handed alpha
Helix 36	AD9	L	536	543	Right-handed alpha
Helix 37	AE1	L	571	596	Right-handed alpha
Helix 38	AE2	L	611	615	Right-handed 310
Helix 39	AE3	L	619	624	Right-handed alpha
Helix 40	AE4	L	627	636	Right-handed alpha
Helix 41	AE5	L	638	646	Right-handed alpha
Helix 42	AE6	L	649	663	Right-handed alpha
Helix 43	AE7	N	81	85	Right-handed 310

There are 45 sheets in PDB entry 8SB2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	177	first strand
Strand 2	A	150	162	anti-parallel
Strand 3	A	129	135	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	433	435	parallel
Strand 3	A	423	425	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	443	456	anti-parallel
Strand 3	A	284	298	anti-parallel
Strand 4	A	330	334	anti-parallel
Strand 5	A	413	421	anti-parallel
Strand 6	A	381	385	anti-parallel
Strand 7	A	374	378	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	298	anti-parallel
Strand 3	A	443	456	anti-parallel
Strand 4	A	468	470	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	308	first strand
Strand 2	A	316	322	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	393	395	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	92	101	anti-parallel
Strand 4	C	32	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	47	51	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	99	101	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	23	first strand
Strand 2	D	72	78	anti-parallel
Strand 3	D	64	69	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	494	499	first strand
Strand 2	F	35	40	anti-parallel
Strand 3	G	603	609	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	486	491	anti-parallel
Strand 3	F	223	228	anti-parallel
Strand 4	F	242	245	anti-parallel
Strand 5	F	84	85	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	53	56	parallel
Strand 3	F	216	218	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	236	239	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	177	first strand
Strand 2	F	150	162	anti-parallel
Strand 3	F	129	135	anti-parallel
Strand 4	F	190	193	anti-parallel
Strand 5	F	181	183	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	203	first strand
Strand 2	F	434	435	parallel
Strand 3	F	423	424	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	261	first strand
Strand 2	F	443	456	anti-parallel
Strand 3	F	284	298	anti-parallel
Strand 4	F	330	334	anti-parallel
Strand 5	F	413	421	anti-parallel
Strand 6	F	381	385	anti-parallel
Strand 7	F	374	378	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	273	first strand
Strand 2	F	284	298	anti-parallel
Strand 3	F	443	456	anti-parallel
Strand 4	F	468	470	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	302	308	first strand
Strand 2	F	316	322	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	359	361	first strand
Strand 2	F	393	395	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	121	125	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	12	first strand
Strand 2	I	105	109	parallel
Strand 3	I	86	93	anti-parallel
Strand 4	I	35	40	anti-parallel
Strand 5	I	47	51	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	12	first strand
Strand 2	I	105	109	parallel
Strand 3	I	86	93	anti-parallel
Strand 4	I	99	101	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	23	first strand
Strand 2	I	72	78	anti-parallel
Strand 3	I	64	69	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	494	499	first strand
Strand 2	K	35	40	anti-parallel
Strand 3	L	603	609	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	47	first strand
Strand 2	K	486	491	anti-parallel
Strand 3	K	223	228	anti-parallel
Strand 4	K	242	245	anti-parallel
Strand 5	K	84	85	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	75	76	first strand
Strand 2	K	53	56	parallel
Strand 3	K	216	218	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	91	94	first strand
Strand 2	K	236	239	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	169	177	first strand
Strand 2	K	150	162	anti-parallel
Strand 3	K	129	135	anti-parallel
Strand 4	K	190	193	anti-parallel
Strand 5	K	181	183	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	202	203	first strand
Strand 2	K	433	435	parallel
Strand 3	K	423	425	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	259	261	first strand
Strand 2	K	443	456	anti-parallel
Strand 3	K	284	298	anti-parallel
Strand 4	K	330	334	anti-parallel
Strand 5	K	413	421	anti-parallel
Strand 6	K	382	385	anti-parallel
Strand 7	K	374	377	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	271	273	first strand
Strand 2	K	284	298	anti-parallel
Strand 3	K	443	456	anti-parallel
Strand 4	K	468	470	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	304	308	first strand
Strand 2	K	316	320	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	359	361	first strand
Strand 2	K	393	395	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	6	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	78	83	anti-parallel
Strand 4	M	68	73	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	121	125	parallel
Strand 3	M	92	101	anti-parallel
Strand 4	M	32	39	anti-parallel
Strand 5	M	45	51	anti-parallel
Strand 6	M	58	60	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	12	first strand
Strand 2	N	105	109	parallel
Strand 3	N	86	93	anti-parallel
Strand 4	N	35	40	anti-parallel
Strand 5	N	47	51	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	12	first strand
Strand 2	N	105	109	parallel
Strand 3	N	86	93	anti-parallel
Strand 4	N	99	101	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	17	23	first strand
Strand 2	N	72	78	anti-parallel
Strand 3	N	64	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SB2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SB2