Analysis of interatomic Contacts of Structural Units in PDB entry:
8SB5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SB5 entry

There are 12 chains in PDB entry 8SB5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 32	VAL 505
B	ALA 512	ASP 664
C	GLN 1	SER 126
D	GLN 231	LEU 340
F	GLU 32	VAL 505
G	ALA 512	ASP 664
H	GLN 1	SER 126
I	GLN 231	LEU 340
K	GLU 32	VAL 505
L	ALA 512	ASP 664
M	GLN 1	SER 126
N	GLN 231	LEU 340

There are 52 helices in PDB entry 8SB5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	61	Right-handed 310
Helix 2	AA2	A	68	72	Right-handed 310
Helix 3	AA3	A	98	116	Right-handed alpha
Helix 4	AA4	A	177	179	Right-handed 310
Helix 5	AA5	A	335	351	Right-handed alpha
Helix 6	AA6	A	368	373	Right-handed alpha
Helix 7	AA7	A	387	390	Right-handed 310
Helix 8	AA8	A	475	481	Right-handed alpha
Helix 9	AA9	B	529	534	Right-handed alpha
Helix 10	AB1	B	536	543	Right-handed alpha
Helix 11	AB2	B	573	596	Right-handed alpha
Helix 12	AB3	B	611	615	Right-handed 310
Helix 13	AB4	B	618	624	Right-handed alpha
Helix 14	AB5	B	627	636	Right-handed alpha
Helix 15	AB6	B	638	664	Right-handed alpha
Helix 16	AB7	C	28	30	Right-handed 310
Helix 17	AB8	C	87	91	Right-handed 310
Helix 18	AB9	D	311	315	Right-handed 310
Helix 19	AC1	F	57	61	Right-handed 310
Helix 20	AC2	F	68	72	Right-handed 310
Helix 21	AC3	F	98	117	Right-handed alpha
Helix 22	AC4	F	177	179	Right-handed 310
Helix 23	AC5	F	335	351	Right-handed alpha
Helix 24	AC6	F	368	373	Right-handed alpha
Helix 25	AC7	F	387	390	Right-handed 310
Helix 26	AC8	F	475	481	Right-handed alpha
Helix 27	AC9	G	529	534	Right-handed alpha
Helix 28	AD1	G	536	543	Right-handed alpha
Helix 29	AD2	G	571	596	Right-handed alpha
Helix 30	AD3	G	611	615	Right-handed 310
Helix 31	AD4	G	618	624	Right-handed alpha
Helix 32	AD5	G	627	636	Right-handed alpha
Helix 33	AD6	G	638	664	Right-handed alpha
Helix 34	AD7	H	87	91	Right-handed 310
Helix 35	AD8	I	311	315	Right-handed 310
Helix 36	AD9	K	57	61	Right-handed 310
Helix 37	AE1	K	68	72	Right-handed 310
Helix 38	AE2	K	98	117	Right-handed alpha
Helix 39	AE3	K	177	179	Right-handed 310
Helix 40	AE4	K	335	351	Right-handed alpha
Helix 41	AE5	K	368	373	Right-handed alpha
Helix 42	AE6	K	387	390	Right-handed 310
Helix 43	AE7	K	475	481	Right-handed alpha
Helix 44	AE8	L	529	534	Right-handed alpha
Helix 45	AE9	L	536	543	Right-handed alpha
Helix 46	AF1	L	571	596	Right-handed alpha
Helix 47	AF2	L	611	615	Right-handed 310
Helix 48	AF3	L	618	624	Right-handed alpha
Helix 49	AF4	L	627	636	Right-handed alpha
Helix 50	AF5	L	638	664	Right-handed alpha
Helix 51	AF6	M	87	91	Right-handed 310
Helix 52	AF7	N	311	315	Right-handed 310

There are 46 sheets in PDB entry 8SB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	603	604	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	86	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	75	76	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	176	first strand
Strand 2	A	155	162	anti-parallel
Strand 3	A	129	132	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	447	456	anti-parallel
Strand 3	A	284	297	anti-parallel
Strand 4	A	330	334	anti-parallel
Strand 5	A	413	421	anti-parallel
Strand 6	A	381	385	anti-parallel
Strand 7	A	374	378	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	297	anti-parallel
Strand 3	A	447	456	anti-parallel
Strand 4	A	467	470	anti-parallel
Strand 5	A	359	361	parallel
Strand 6	A	394	395	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	308	first strand
Strand 2	A	316	322	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	434	435	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	45	51	anti-parallel
Strand 3	C	32	39	anti-parallel
Strand 4	C	92	101	anti-parallel
Strand 5	C	116	117	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	45	51	anti-parallel
Strand 3	C	32	39	anti-parallel
Strand 4	C	92	101	anti-parallel
Strand 5	C	121	123	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	253	first strand
Strand 2	D	302	307	anti-parallel
Strand 3	D	295	299	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	281	first strand
Strand 2	D	265	270	anti-parallel
Strand 3	D	317	323	anti-parallel
Strand 4	D	329	331	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	281	first strand
Strand 2	D	265	270	anti-parallel
Strand 3	D	317	323	anti-parallel
Strand 4	D	335	336	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	494	499	first strand
Strand 2	F	35	40	anti-parallel
Strand 3	G	603	604	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	47	first strand
Strand 2	F	486	491	anti-parallel
Strand 3	F	223	228	anti-parallel
Strand 4	F	242	245	anti-parallel
Strand 5	F	84	86	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	53	56	parallel
Strand 3	F	216	218	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	93	first strand
Strand 2	F	237	239	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	176	first strand
Strand 2	F	155	162	anti-parallel
Strand 3	F	129	132	anti-parallel
Strand 4	F	190	193	anti-parallel
Strand 5	F	181	183	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	261	first strand
Strand 2	F	447	456	anti-parallel
Strand 3	F	284	297	anti-parallel
Strand 4	F	330	334	anti-parallel
Strand 5	F	413	421	anti-parallel
Strand 6	F	381	385	anti-parallel
Strand 7	F	374	378	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	273	first strand
Strand 2	F	284	297	anti-parallel
Strand 3	F	447	456	anti-parallel
Strand 4	F	467	470	anti-parallel
Strand 5	F	359	361	parallel
Strand 6	F	394	395	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	302	308	first strand
Strand 2	F	316	322	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	423	424	first strand
Strand 2	F	434	435	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	32	39	anti-parallel
Strand 4	H	92	101	anti-parallel
Strand 5	H	116	117	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	32	39	anti-parallel
Strand 4	H	92	101	anti-parallel
Strand 5	H	121	123	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	248	253	first strand
Strand 2	I	302	307	anti-parallel
Strand 3	I	295	299	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	277	281	first strand
Strand 2	I	265	270	anti-parallel
Strand 3	I	316	323	anti-parallel
Strand 4	I	329	331	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	277	281	first strand
Strand 2	I	265	270	anti-parallel
Strand 3	I	316	323	anti-parallel
Strand 4	I	335	337	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	494	499	first strand
Strand 2	K	35	40	anti-parallel
Strand 3	L	603	604	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	47	first strand
Strand 2	K	486	491	anti-parallel
Strand 3	K	223	228	anti-parallel
Strand 4	K	242	245	anti-parallel
Strand 5	K	84	86	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	55	56	first strand
Strand 2	K	75	76	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	91	94	first strand
Strand 2	K	236	239	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	169	176	first strand
Strand 2	K	155	162	anti-parallel
Strand 3	K	129	132	anti-parallel
Strand 4	K	190	193	anti-parallel
Strand 5	K	181	183	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	259	261	first strand
Strand 2	K	447	454	anti-parallel
Strand 3	K	284	297	anti-parallel
Strand 4	K	271	273	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	259	261	first strand
Strand 2	K	447	454	anti-parallel
Strand 3	K	284	297	anti-parallel
Strand 4	K	330	334	anti-parallel
Strand 5	K	413	421	anti-parallel
Strand 6	K	381	385	anti-parallel
Strand 7	K	374	378	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	302	308	first strand
Strand 2	K	316	322	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	394	395	first strand
Strand 2	K	359	361	anti-parallel
Strand 3	K	467	468	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	423	424	first strand
Strand 2	K	434	435	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	6	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	78	83	anti-parallel
Strand 4	M	68	73	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	58	60	first strand
Strand 2	M	45	51	anti-parallel
Strand 3	M	32	39	anti-parallel
Strand 4	M	92	101	anti-parallel
Strand 5	M	116	117	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	58	60	first strand
Strand 2	M	45	51	anti-parallel
Strand 3	M	32	39	anti-parallel
Strand 4	M	92	101	anti-parallel
Strand 5	M	121	123	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	248	253	first strand
Strand 2	N	302	307	anti-parallel
Strand 3	N	294	299	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	277	281	first strand
Strand 2	N	265	270	anti-parallel
Strand 3	N	317	323	anti-parallel
Strand 4	N	329	331	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	277	281	first strand
Strand 2	N	265	270	anti-parallel
Strand 3	N	317	323	anti-parallel
Strand 4	N	335	336	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SB5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SB5