Analysis of interatomic Contacts of Structural Units in PDB entry:
8SB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SB9 entry

There is 1 chain in PDB entry 8SB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 37ALA 1275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8SB9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 46Right-handed 310
Helix 2
AA2
A
47 85Right-handed alpha
Helix 3
AA3
A
107 158Right-handed alpha
Helix 4
AA4
A
159 166Right-handed alpha
Helix 5
AA5
A
167 185Right-handed alpha
Helix 6
AA6
A
187 211Right-handed alpha
Helix 7
AA7
A
213 260Right-handed alpha
Helix 8
AA8
A
260 268Right-handed alpha
Helix 9
AA9
A
269 323Right-handed alpha
Helix 10
AB1
A
327 348Right-handed alpha
Helix 11
AB2
A
348 371Right-handed alpha
Helix 12
AB3
A
401 405Right-handed 310
Helix 13
AB4
A
432 441Right-handed alpha
Helix 14
AB5
A
462 469Right-handed alpha
Helix 15
AB6
A
483 490Right-handed alpha
Helix 16
AB7
A
496 508Right-handed alpha
Helix 17
AB8
A
509 516Right-handed alpha
Helix 18
AB9
A
532 547Right-handed alpha
Helix 19
AC1
A
562 578Right-handed alpha
Helix 20
AC2
A
588 594Right-handed alpha
Helix 21
AC3
A
611 618Right-handed alpha
Helix 22
AC4
A
620 630Right-handed alpha
Helix 23
AC5
A
701 706Right-handed 310
Helix 24
AC6
A
707 741Right-handed alpha
Helix 25
AC7
A
746 798Right-handed alpha
Helix 26
AC8
A
800 806Right-handed alpha
Helix 27
AC9
A
807 809Right-handed 310
Helix 28
AD1
A
810 820Right-handed alpha
Helix 29
AD2
A
821 853Right-handed alpha
Helix 30
AD3
A
855 879Right-handed alpha
Helix 31
AD4
A
885 894Right-handed alpha
Helix 32
AD5
A
894 903Right-handed alpha
Helix 33
AD6
A
903 910Right-handed alpha
Helix 34
AD7
A
912 966Right-handed alpha
Helix 35
AD8
A
970 995Right-handed alpha
Helix 36
AD9
A
997 1014Right-handed alpha
Helix 37
AE1
A
1075 1084Right-handed alpha
Helix 38
AE2
A
1105 1113Right-handed alpha
Helix 39
AE3
A
1126 1133Right-handed alpha
Helix 40
AE4
A
1141 1153Right-handed alpha
Helix 41
AE5
A
1154 1161Right-handed alpha
Helix 42
AE6
A
1163 1167Right-handed 310
Helix 43
AE7
A
1177 1192Right-handed alpha
Helix 44
AE8
A
1207 1223Right-handed alpha
Helix 45
AE9
A
1234 1239Right-handed alpha
Helix 46
AF1
A
1256 1263Right-handed alpha
Helix 47
AF2
A
1265 1275Right-handed alpha
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There are 5 sheets in PDB entry 8SB9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
392 399anti-parallel
Strand 3
A
415 417anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
392 399anti-parallel
Strand 3
A
448 453anti-parallel
Strand 4
A
456 457anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 473first strand
Strand 2
A
551 555parallel
Strand 3
A
581 585parallel
Strand 4
A
422 426parallel
Strand 5
A
597 602parallel
Strand 6
A
605 610anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1056 1060first strand
Strand 2
A
1035 1041anti-parallel
Strand 3
A
1091 1096anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1116first strand
Strand 2
A
1196 1200parallel
Strand 3
A
1226 1230parallel
Strand 4
A
1065 1069parallel
Strand 5
A
1242 1247parallel
Strand 6
A
1250 1255anti-parallel
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