Analysis of interatomic Contacts of Structural Units in PDB entry:
8SBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SBB entry

There are 2 chains in PDB entry 8SBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 19THR 398
B
 GLN 3THR 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8SBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 29Right-handed 310
Helix 2
AA2
A
30 35Right-handed alpha
Helix 3
AA3
A
37 49Right-handed alpha
Helix 4
AA4
A
52 56Right-handed 310
Helix 5
AA5
A
57 64Right-handed alpha
Helix 6
AA6
A
64 74Right-handed alpha
Helix 7
AA7
A
84 89Right-handed alpha
Helix 8
AA8
A
92 100Right-handed alpha
Helix 9
AA9
A
100 119Right-handed alpha
Helix 10
AB1
A
120 123Right-handed 310
Helix 11
AB2
A
124 147Right-handed alpha
Helix 12
AB3
A
148 150Right-handed 310
Helix 13
AB4
A
154 167Right-handed alpha
Helix 14
AB5
A
172 185Right-handed alpha
Helix 15
AB6
A
199 225Right-handed alpha
Helix 16
AB7
A
240 256Right-handed alpha
Helix 17
AB8
A
259 282Right-handed alpha
Helix 18
AB9
A
308 315Right-handed alpha
Helix 19
AC1
A
320 327Right-handed alpha
Helix 20
AC2
A
347 356Right-handed alpha
Helix 21
AC3
A
357 374Right-handed alpha
Helix 22
AC4
A
386 393Right-handed alpha
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There are 2 sheets in PDB entry 8SBB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
81 85anti-parallel
Strand 4
B
70 72anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 54first strand
Strand 2
B
35 41anti-parallel
Strand 3
B
94 99anti-parallel
Strand 4
B
116 117anti-parallel
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