Analysis of interatomic Contacts of Structural Units in PDB entry:
8SBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SBD entry

There are 32 chains in PDB entry 8SBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
p
 HIS 5CYS 19
o
 HIS 5THR 27
n
 HIS 5CYS 19
m
 HIS 5THR 27
l
 HIS 5CYS 19
k
 HIS 5THR 27
j
 HIS 5CYS 19
i
 HIS 5THR 27
h
 HIS 5CYS 19
g
 HIS 5THR 27
f
 HIS 5CYS 19
e
 HIS 5THR 27
d
 HIS 5CYS 19
c
 HIS 5THR 27
b
 HIS 5CYS 19
a
 HIS 5THR 27
P
 ILE 2CYS 20
O
 GLN 5CYS 20
N
 ILE 2CYS 20
M
 GLN 5CYS 20
L
 ILE 2CYS 20
K
 GLN 5CYS 20
J
 ILE 2CYS 20
I
 GLN 5CYS 20
H
 ILE 2CYS 20
G
 GLN 5CYS 20
F
 ILE 2CYS 20
E
 GLN 5CYS 20
D
 ILE 2CYS 20
C
 GLN 5CYS 20
B
 ILE 2CYS 20
A
 GLN 5CYS 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page
There are no helices in PDB entry 8SBD

There are 5 sheets in PDB entry 8SBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
n
15 17first strand
Strand 2
p
15 17parallel
Strand 3
j
15 17parallel
Strand 4
l
15 17parallel
Strand 5
f
15 17parallel
Strand 6
h
15 17parallel
Strand 7
b
15 17parallel
Strand 8
d
15 17parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
m
12 19first strand
Strand 2
o
12 19parallel
Strand 3
i
12 19parallel
Strand 4
k
12 19parallel
Strand 5
e
12 19parallel
Strand 6
g
12 19parallel
Strand 7
a
12 19parallel
Strand 8
c
12 19parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
m
24 25first strand
Strand 2
o
24 25parallel
Strand 3
i
24 25parallel
Strand 4
k
24 25parallel
Strand 5
e
24 25parallel
Strand 6
g
24 25parallel
Strand 7
a
24 25parallel
Strand 8
c
24 25parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
15 19first strand
Strand 2
P
15 19parallel
Strand 3
J
15 19parallel
Strand 4
L
15 19parallel
Strand 5
F
15 19parallel
Strand 6
H
15 19parallel
Strand 7
B
15 19parallel
Strand 8
D
15 19parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
15 16first strand
Strand 2
O
15 16parallel
Strand 3
I
15 16parallel
Strand 4
K
15 16parallel
Strand 5
E
15 16parallel
Strand 6
G
15 16parallel
Strand 7
A
15 16parallel
Strand 8
C
15 16parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il