Analysis of interatomic Contacts of Structural Units in PDB entry:
8SBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SBG entry

There is 1 chain in PDB entry 8SBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3ARG 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8SBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 34Right-handed alpha
Helix 2
AA2
A
37 41Right-handed 310
Helix 3
AA3
A
42 46Right-handed 310
Helix 4
AA4
A
60 69Right-handed alpha
Helix 5
AA5
A
77 92Right-handed alpha
Helix 6
AA6
A
101 114Right-handed alpha
Helix 7
AA7
A
126 135Right-handed alpha
Helix 8
AA8
A
145 150Right-handed 310
Helix 9
AA9
A
162 174Right-handed alpha
Helix 10
AB1
A
175 177Right-handed 310
Helix 11
AB2
A
195 209Right-handed alpha
Helix 12
AB3
A
219 231Right-handed alpha
Helix 13
AB4
A
238 249Right-handed alpha
Helix 14
AB5
A
273 288Right-handed alpha
Helix 15
AB6
A
297 311Right-handed alpha
Helix 16
AB7
A
313 335Right-handed alpha
Helix 17
AB8
A
352 354Right-handed 310
Helix 18
AB9
A
359 362Right-handed 310
Helix 19
AC1
A
363 377Right-handed alpha
Helix 20
AC2
A
384 389Right-handed alpha
Helix 21
AC3
A
415 432Right-handed alpha
Helix 22
AC4
A
433 436Right-handed 310
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There are 5 sheets in PDB entry 8SBG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
378 379parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 99first strand
Strand 2
A
267 271anti-parallel
Strand 3
A
252 256anti-parallel
Strand 4
A
213 216parallel
Strand 5
A
180 183parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
139 142parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 350first strand
Strand 2
A
404 408anti-parallel
Strand 3
A
381 383anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 442first strand
Strand 2
A
456 457anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il