Analysis of interatomic Contacts of Structural Units in PDB entry:
8SBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SBH entry

There are 4 chains in PDB entry 8SBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 90PRO 147
A
 HIS 149PRO 288
B
 MET 90PRO 147
B
 HIS 149PRO 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8SBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 103Right-handed alpha
Helix 2
AA2
A
103 115Right-handed alpha
Helix 3
AA3
A
126 136Right-handed alpha
Helix 4
AA4
A
171 175Right-handed 310
Helix 5
AA5
A
179 185Right-handed alpha
Helix 6
AA6
A
195 205Right-handed alpha
Helix 7
AA7
A
206 209Right-handed 310
Helix 8
AA8
A
220 230Right-handed alpha
Helix 9
AA9
A
239 248Right-handed alpha
Helix 10
AB1
A
276 287Right-handed alpha
Helix 11
AB2
B
97 103Right-handed alpha
Helix 12
AB3
B
103 115Right-handed alpha
Helix 13
AB4
B
126 136Right-handed alpha
Helix 14
AB5
B
171 175Right-handed 310
Helix 15
AB6
B
179 185Right-handed alpha
Helix 16
AB7
B
195 205Right-handed alpha
Helix 17
AB8
B
206 209Right-handed 310
Helix 18
AB9
B
220 230Right-handed alpha
Helix 19
AC1
B
239 249Right-handed alpha
Helix 20
AC2
B
276 286Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8SBH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
91 95parallel
Strand 3
A
141 144parallel
Strand 4
A
261 270anti-parallel
Strand 5
A
153 167anti-parallel
Strand 6
A
235 238anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
91 95parallel
Strand 3
A
141 144parallel
Strand 4
A
261 270anti-parallel
Strand 5
A
153 167anti-parallel
Strand 6
A
252 253anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
214 217parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 125first strand
Strand 2
B
91 96parallel
Strand 3
B
141 144parallel
Strand 4
B
261 270anti-parallel
Strand 5
B
153 167anti-parallel
Strand 6
B
235 238anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 125first strand
Strand 2
B
91 96parallel
Strand 3
B
141 144parallel
Strand 4
B
261 270anti-parallel
Strand 5
B
153 167anti-parallel
Strand 6
B
252 253anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 190first strand
Strand 2
B
213 217parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il