Analysis of interatomic Contacts of Structural Units in PDB entry:
8SBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SBU entry

There are 2 chains in PDB entry 8SBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 11LEU 617
B
 GLU 11LEU 617
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8SBU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 39Right-handed alpha
Helix 2
AA2
A
49 60Right-handed alpha
Helix 3
AA3
A
73 80Right-handed alpha
Helix 4
AA4
A
89 94Right-handed alpha
Helix 5
AA5
A
97 104Right-handed alpha
Helix 6
AA6
A
138 148Right-handed alpha
Helix 7
AA7
A
160 169Right-handed alpha
Helix 8
AA8
A
192 208Right-handed alpha
Helix 9
AA9
A
216 226Right-handed alpha
Helix 10
AB1
A
235 237Right-handed 310
Helix 11
AB2
A
238 245Right-handed alpha
Helix 12
AB3
A
279 290Right-handed alpha
Helix 13
AB4
A
293 304Right-handed alpha
Helix 14
AB5
A
311 319Right-handed alpha
Helix 15
AB6
A
321 334Right-handed alpha
Helix 16
AB7
A
342 359Right-handed alpha
Helix 17
AB8
A
363 377Right-handed alpha
Helix 18
AB9
A
382 395Right-handed alpha
Helix 19
AC1
A
397 413Right-handed alpha
Helix 20
AC2
A
420 425Right-handed alpha
Helix 21
AC3
A
440 453Right-handed alpha
Helix 22
AC4
A
466 472Right-handed alpha
Helix 23
AC5
A
487 497Right-handed alpha
Helix 24
AC6
A
509 517Right-handed alpha
Helix 25
AC7
A
518 520Right-handed 310
Helix 26
AC8
A
531 536Right-handed alpha
Helix 27
AC9
A
547 559Right-handed alpha
Helix 28
AD1
A
594 609Right-handed alpha
Helix 29
AD2
B
23 39Right-handed alpha
Helix 30
AD3
B
49 61Right-handed alpha
Helix 31
AD4
B
73 80Right-handed alpha
Helix 32
AD5
B
89 94Right-handed alpha
Helix 33
AD6
B
97 104Right-handed alpha
Helix 34
AD7
B
138 148Right-handed alpha
Helix 35
AD8
B
160 171Right-handed alpha
Helix 36
AD9
B
192 208Right-handed alpha
Helix 37
AE1
B
216 226Right-handed alpha
Helix 38
AE2
B
235 237Right-handed 310
Helix 39
AE3
B
238 245Right-handed alpha
Helix 40
AE4
B
279 290Right-handed alpha
Helix 41
AE5
B
293 304Right-handed alpha
Helix 42
AE6
B
311 319Right-handed alpha
Helix 43
AE7
B
321 334Right-handed alpha
Helix 44
AE8
B
342 360Right-handed alpha
Helix 45
AE9
B
363 376Right-handed alpha
Helix 46
AF1
B
382 395Right-handed alpha
Helix 47
AF2
B
397 413Right-handed alpha
Helix 48
AF3
B
420 425Right-handed alpha
Helix 49
AF4
B
440 453Right-handed alpha
Helix 50
AF5
B
466 472Right-handed alpha
Helix 51
AF6
B
487 497Right-handed alpha
Helix 52
AF7
B
509 517Right-handed alpha
Helix 53
AF8
B
518 520Right-handed 310
Helix 54
AF9
B
547 559Right-handed alpha
Helix 55
AG1
B
594 609Right-handed alpha
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There are 13 sheets in PDB entry 8SBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
14 17parallel
Strand 3
A
66 70parallel
Strand 4
A
265 273anti-parallel
Strand 5
A
113 118anti-parallel
Strand 6
A
308 309anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
14 17parallel
Strand 3
A
66 70parallel
Strand 4
A
265 273anti-parallel
Strand 5
A
335 336parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
109 110anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
229 234parallel
Strand 3
A
121 125anti-parallel
Strand 4
A
249 252anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
182 184anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
260 261anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 541first strand
Strand 2
A
523 526parallel
Strand 3
A
500 504parallel
Strand 4
A
479 482parallel
Strand 5
A
460 463parallel
Strand 6
A
431 435parallel
Strand 7
A
563 566parallel
Strand 8
A
613 616parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
14 17parallel
Strand 3
B
66 70parallel
Strand 4
B
265 273anti-parallel
Strand 5
B
113 118anti-parallel
Strand 6
B
308 309anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
14 17parallel
Strand 3
B
66 70parallel
Strand 4
B
265 273anti-parallel
Strand 5
B
335 336parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
109 110anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 234first strand
Strand 2
B
121 125anti-parallel
Strand 3
B
249 252anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 179first strand
Strand 2
B
182 189anti-parallel
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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
540 541first strand
Strand 2
B
523 527parallel
Strand 3
B
500 505parallel
Strand 4
B
479 482parallel
Strand 5
B
460 463parallel
Strand 6
B
432 435parallel
Strand 7
B
563 566parallel
Strand 8
B
613 616parallel
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