Analysis of interatomic Contacts of Structural Units in PDB entry:
8SC2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SC2 entry

There is 1 chain in PDB entry 8SC2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 19PRO 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8SC2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 31Right-handed alpha
Helix 2
AA2
A
32 38Right-handed alpha
Helix 3
AA3
A
38 43Right-handed alpha
Helix 4
AA4
A
54 63Right-handed alpha
Helix 5
AA5
A
65 73Right-handed alpha
Helix 6
AA6
A
83 88Right-handed alpha
Helix 7
AA7
A
105 109Right-handed 310
Helix 8
AA8
A
112 116Right-handed 310
Helix 9
AA9
A
133 139Right-handed alpha
Helix 10
AB1
A
141 145Right-handed 310
Helix 11
AB2
A
146 173Right-handed alpha
Helix 12
AB3
A
174 194Right-handed alpha
Helix 13
AB4
A
198 228Right-handed alpha
Helix 14
AB5
A
229 231Right-handed 310
Helix 15
AB6
A
232 258Right-handed alpha
Helix 16
AB7
A
260 279Right-handed alpha
Helix 17
AB8
A
335 340Right-handed alpha
Helix 18
AB9
A
340 372Right-handed alpha
Helix 19
AC1
A
374 385Right-handed alpha
Helix 20
AC2
A
385 401Right-handed alpha
Helix 21
AC3
A
402 420Right-handed alpha
Helix 22
AC4
A
427 457Right-handed alpha
Helix 23
AC5
A
461 491Right-handed alpha
Helix 24
AC6
A
493 510Right-handed alpha
Helix 25
AC7
A
511 513Right-handed 310
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There are 2 sheets in PDB entry 8SC2. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
125 127anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
118 119anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il