Analysis of interatomic Contacts of Structural Units in PDB entry:
8SC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SC6 entry

There is 1 chain in PDB entry 8SC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 19GLU 515
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8SC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 31Right-handed alpha
Helix 2
AA2
A
32 38Right-handed alpha
Helix 3
AA3
A
38 43Right-handed alpha
Helix 4
AA4
A
54 63Right-handed alpha
Helix 5
AA5
A
65 74Right-handed alpha
Helix 6
AA6
A
83 88Right-handed alpha
Helix 7
AA7
A
112 116Right-handed 310
Helix 8
AA8
A
133 139Right-handed alpha
Helix 9
AA9
A
141 147Right-handed 310
Helix 10
AB1
A
148 173Right-handed alpha
Helix 11
AB2
A
174 194Right-handed alpha
Helix 12
AB3
A
198 228Right-handed alpha
Helix 13
AB4
A
232 258Right-handed alpha
Helix 14
AB5
A
260 278Right-handed alpha
Helix 15
AB6
A
333 339Right-handed 310
Helix 16
AB7
A
340 372Right-handed alpha
Helix 17
AB8
A
374 385Right-handed alpha
Helix 18
AB9
A
385 398Right-handed alpha
Helix 19
AC1
A
402 420Right-handed alpha
Helix 20
AC2
A
427 456Right-handed alpha
Helix 21
AC3
A
461 491Right-handed alpha
Helix 22
AC4
A
493 511Right-handed alpha
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There are 2 sheets in PDB entry 8SC6. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
125 127anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
118 119anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il