Analysis of interatomic Contacts of Structural Units in PDB entry:
8SCL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SCL entry

There are 8 chains in PDB entry 8SCL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 298	LYS 876
B	G 1	G 8
B	DG 10	DG 10
C	C 1	A 13
D	LYS 298	LYS 876
E	G 1	G 8
E	DG 10	DG 10
F	C 1	A 13

There are 61 helices in PDB entry 8SCL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	308	312	Right-handed 310
Helix 2	AA2	A	347	352	Right-handed alpha
Helix 3	AA3	A	354	363	Right-handed alpha
Helix 4	AA4	A	372	382	Right-handed alpha
Helix 5	AA5	A	394	402	Right-handed alpha
Helix 6	AA6	A	403	406	Right-handed 310
Helix 7	AA7	A	409	416	Right-handed alpha
Helix 8	AA8	A	424	430	Right-handed alpha
Helix 9	AA9	A	431	435	Right-handed 310
Helix 10	AB1	A	439	468	Right-handed alpha
Helix 11	AB2	A	470	477	Right-handed alpha
Helix 12	AB3	A	477	492	Right-handed alpha
Helix 13	AB4	A	496	522	Right-handed alpha
Helix 14	AB5	A	530	540	Right-handed alpha
Helix 15	AB6	A	557	564	Right-handed alpha
Helix 16	AB7	A	569	587	Right-handed alpha
Helix 17	AB8	A	588	595	Right-handed alpha
Helix 18	AB9	A	630	635	Right-handed alpha
Helix 19	AC1	A	636	638	Right-handed 310
Helix 20	AC2	A	656	667	Right-handed alpha
Helix 21	AC3	A	668	677	Right-handed alpha
Helix 22	AC4	A	680	691	Right-handed alpha
Helix 23	AC5	A	693	697	Right-handed 310
Helix 24	AC6	A	698	714	Right-handed alpha
Helix 25	AC7	A	717	726	Right-handed alpha
Helix 26	AC8	A	728	743	Right-handed alpha
Helix 27	AC9	A	743	761	Right-handed alpha
Helix 28	AD1	A	774	778	Right-handed 310
Helix 29	AD2	A	780	818	Right-handed alpha
Helix 30	AD3	A	840	854	Right-handed alpha
Helix 31	AD4	D	308	312	Right-handed 310
Helix 32	AD5	D	347	353	Right-handed alpha
Helix 33	AD6	D	354	363	Right-handed alpha
Helix 34	AD7	D	372	383	Right-handed alpha
Helix 35	AD8	D	394	402	Right-handed alpha
Helix 36	AD9	D	403	406	Right-handed 310
Helix 37	AE1	D	409	416	Right-handed alpha
Helix 38	AE2	D	424	430	Right-handed alpha
Helix 39	AE3	D	431	435	Right-handed 310
Helix 40	AE4	D	439	468	Right-handed alpha
Helix 41	AE5	D	470	477	Right-handed alpha
Helix 42	AE6	D	477	492	Right-handed alpha
Helix 43	AE7	D	496	523	Right-handed alpha
Helix 44	AE8	D	530	540	Right-handed alpha
Helix 45	AE9	D	557	564	Right-handed alpha
Helix 46	AF1	D	569	588	Right-handed alpha
Helix 47	AF2	D	588	595	Right-handed alpha
Helix 48	AF3	D	630	635	Right-handed alpha
Helix 49	AF4	D	636	638	Right-handed 310
Helix 50	AF5	D	656	667	Right-handed alpha
Helix 51	AF6	D	668	675	Right-handed alpha
Helix 52	AF7	D	680	691	Right-handed alpha
Helix 53	AF8	D	693	697	Right-handed 310
Helix 54	AF9	D	698	714	Right-handed alpha
Helix 55	AG1	D	717	726	Right-handed alpha
Helix 56	AG2	D	728	743	Right-handed alpha
Helix 57	AG3	D	743	761	Right-handed alpha
Helix 58	AG4	D	780	818	Right-handed alpha
Helix 59	AG5	D	839	841	Right-handed 310
Helix 60	AG6	D	842	854	Right-handed alpha
Helix 61	AG7	D	871	875	Right-handed 310

There are 11 sheets in PDB entry 8SCL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	304	first strand
Strand 2	A	342	346	parallel
Strand 3	A	334	339	anti-parallel
Strand 4	A	315	321	anti-parallel
Strand 5	A	367	370	parallel
Strand 6	A	390	393	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	602	first strand
Strand 2	A	493	495	anti-parallel
Strand 3	A	640	641	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	550	first strand
Strand 2	A	553	554	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	607	first strand
Strand 2	A	617	619	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	823	827	first strand
Strand 2	A	831	837	anti-parallel
Strand 3	A	647	654	anti-parallel
Strand 4	A	864	869	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	762	764	first strand
Strand 2	A	770	772	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	304	first strand
Strand 2	D	342	346	parallel
Strand 3	D	334	339	anti-parallel
Strand 4	D	315	321	anti-parallel
Strand 5	D	367	370	parallel
Strand 6	D	390	393	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	601	602	first strand
Strand 2	D	493	495	anti-parallel
Strand 3	D	640	641	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	605	607	first strand
Strand 2	D	617	619	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	823	827	first strand
Strand 2	D	831	837	anti-parallel
Strand 3	D	647	654	anti-parallel
Strand 4	D	864	869	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	762	764	first strand
Strand 2	D	770	772	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SCL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SCL