Analysis of interatomic Contacts of Structural Units in PDB entry:
8SCZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SCZ entry

There are 2 chains in PDB entry 8SCZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 242MET 923
B
 G 2 C 64
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8SCZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
244 252Right-handed alpha
Helix 2
AA2
A
252 257Right-handed alpha
Helix 3
AA3
A
267 284Right-handed alpha
Helix 4
AA4
A
299 314Right-handed alpha
Helix 5
AA5
A
333 340Right-handed alpha
Helix 6
AA6
A
347 358Right-handed alpha
Helix 7
AA7
A
362 366Right-handed 310
Helix 8
AA8
A
373 377Right-handed 310
Helix 9
AA9
A
381 395Right-handed alpha
Helix 10
AB1
A
419 434Right-handed alpha
Helix 11
AB2
A
448 452Right-handed 310
Helix 12
AB3
A
469 487Right-handed alpha
Helix 13
AB4
A
492 497Right-handed alpha
Helix 14
AB5
A
506 521Right-handed alpha
Helix 15
AB6
A
529 558Right-handed alpha
Helix 16
AB7
A
559 576Right-handed alpha
Helix 17
AB8
A
580 602Right-handed alpha
Helix 18
AB9
A
608 625Right-handed alpha
Helix 19
AC1
A
636 648Right-handed alpha
Helix 20
AC2
A
744 771Right-handed alpha
Helix 21
AC3
A
772 794Right-handed alpha
Helix 22
AC4
A
838 840Right-handed 310
Helix 23
AC5
A
889 891Right-handed 310
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There are 5 sheets in PDB entry 8SCZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
368 371parallel
Strand 3
A
404 407parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
343 344parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 462first strand
Strand 2
A
737 742parallel
Strand 3
A
711 715parallel
Strand 4
A
630 633parallel
Strand 5
A
693 696parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 819first strand
Strand 2
A
807 809anti-parallel
Strand 3
A
893 895anti-parallel
Strand 4
A
902 904anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
842 846first strand
Strand 2
A
857 864anti-parallel
Strand 3
A
874 878anti-parallel
Strand 4
A
886 887anti-parallel
Strand 5
A
831 833anti-parallel
Strand 6
A
823 825anti-parallel
Strand 7
A
916 917parallel
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