Analysis of interatomic Contacts of Structural Units in PDB entry:
8SD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SD0 entry

There are 2 chains in PDB entry 8SD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 242MET 923
B
 G 2 C 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 8SD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
244 256Right-handed alpha
Helix 2
AA2
A
266 284Right-handed alpha
Helix 3
AA3
A
299 314Right-handed alpha
Helix 4
AA4
A
333 340Right-handed alpha
Helix 5
AA5
A
347 358Right-handed alpha
Helix 6
AA6
A
362 366Right-handed 310
Helix 7
AA7
A
374 377Right-handed 310
Helix 8
AA8
A
381 396Right-handed alpha
Helix 9
AA9
A
419 435Right-handed alpha
Helix 10
AB1
A
445 452Right-handed alpha
Helix 11
AB2
A
469 487Right-handed alpha
Helix 12
AB3
A
492 496Right-handed 310
Helix 13
AB4
A
506 520Right-handed alpha
Helix 14
AB5
A
521 523Right-handed 310
Helix 15
AB6
A
529 558Right-handed alpha
Helix 16
AB7
A
559 576Right-handed alpha
Helix 17
AB8
A
580 602Right-handed alpha
Helix 18
AB9
A
603 607Right-handed 310
Helix 19
AC1
A
608 625Right-handed alpha
Helix 20
AC2
A
636 649Right-handed alpha
Helix 21
AC3
A
744 771Right-handed alpha
Helix 22
AC4
A
772 794Right-handed alpha
Helix 23
AC5
A
837 840Right-handed 310
Helix 24
AC6
A
889 892Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 8SD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
407 409parallel
Strand 3
A
369 372parallel
Strand 4
A
294 296parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
737 742parallel
Strand 3
A
461 462parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
737 742parallel
Strand 3
A
711 715parallel
Strand 4
A
630 633parallel
Strand 5
A
693 696parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 819first strand
Strand 2
A
807 809anti-parallel
Strand 3
A
893 895anti-parallel
Strand 4
A
902 903anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
823 825first strand
Strand 2
A
831 833anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
842 846first strand
Strand 2
A
857 864anti-parallel
Strand 3
A
872 878anti-parallel
Strand 4
A
883 887anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il